Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

New Insights into Nested Long Terminal Repeat Retrotransposons in Brassica Species

(2012) Lijuan Wei et al.   Molecular Plant

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species

(2012) W. Walter Lorenz et al.   Tree Genetics & Genomes

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Characterization of the genome of bald cypress

(2011) Wenxuan Liu et al.   BMC GENOMICS

Transcriptome profiling of wood maturation in Pinus radiata identifies differentially expressed genes with implications in juvenile and mature wood variation

(2011) Xinguo Li et al.   GENE

The first insight into the Taxus genome via fosmid library construction and end sequencing

(2011) DaCheng Hao et al.   MOLECULAR GENETICS AND GENOMICS

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Characterizing the walnut genome through analyses of BAC end sequences

(2011) Jiajie Wu et al.   PLANT MOLECULAR BIOLOGY

Adventures in the Enormous: A 1.8 Million Clone BAC Library for the 21.7 Gb Genome of Loblolly Pine

(2011) Zenaida V. Magbanua et al.   PLoS One

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)

(2010) Pablo F Cavagnaro et al.   BMC GENOMICS

An examination of targeted gene neighborhoods in strawberry

(2010) Thomas M Davis et al.   BMC PLANT BIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome

(2009) Björn Hamberger et al.   BMC PLANT BIOLOGY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Production of ethanol from carbohydrates from loblolly pine: A technical and economic assessment

(2008) W.J. Frederick et al.   BIORESOURCE TECHNOLOGY

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Construction and characterization of a sugar beet (Beta vulgaris) fosmid library

(2008) Cornelia Lange et al.   GENOME

Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes

(2008) G.-F. Richard et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Construction of a fosmid library of cucumber (Cucumis sativus) and comparative analyses of the eIF4E and eIF(iso)4E regions from cucumber and melon (Cucumis melo)

(2008) J. D. F. Meyer et al.   MOLECULAR GENETICS AND GENOMICS

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Genome-Wide Analysis of Repetitive Elements in Papaya

(2008) Niranjan Nagarajan et al.   Tropical Plant Biology