EuroPineDB: a high-coverage web database for maritime pine transcriptome

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

(2011) Aleksandra Adomas et al.   TREE PHYSIOLOGY

AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences

(2010) Darío Guerrero et al.   Algorithms for Molecular Biology

Identification of genes regulated by ammonium availability in the roots of maritime pine trees

(2010) Javier Canales et al.   AMINO ACIDS

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

TreeSNPs: a laboratory information management system (LIMS) dedicated to SNP discovery in trees

(2010) Sébastien Clément et al.   Tree Genetics & Genomes

PineSAP--sequence alignment and SNP identification pipeline

(2009) J. L. Wegrzyn et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

A new genomic resource dedicated to wood formation in Eucalyptus

(2009) David Rengel et al.   BMC PLANT BIOLOGY

Identifying protein-coding genes in genomic sequences

(2009) Jennifer Harrow et al.   GENOME BIOLOGY

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)

(2008) Steven G Ralph et al.   BMC GENOMICS

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

(2008) Gregory Heller et al.   BMC PLANT BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season

(2008) J. A. P. Paiva et al.   NEW PHYTOLOGIST

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH