Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

(2013) Joshua P Der et al.   BMC GENOMICS

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome-wide identification and characterization of miRNAs from Pinus densata

(2012) Li-Chuan Wan et al.   BMC GENOMICS

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

(2012) Sukhjiwan Kaur et al.   BMC GENOMICS

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction

(2012) Gina A Garzón-Martínez et al.   BMC GENOMICS

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

Transcriptome sequencing of wild chickpea as a rich resource for marker development

(2012) Shalu Jhanwar et al.   PLANT BIOTECHNOLOGY JOURNAL

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

Transcriptome Analysis and SNP Development Can Resolve Population Differentiation of Streblospio benedicti, a Developmentally Dimorphic Marine Annelid

(2012) Christina Zakas et al.   PLoS One

Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

(2012) Marvin Mundry et al.   PLoS One

EuroPineDB: a high-coverage web database for maritime pine transcriptome

(2011) Noé Fernández-Pozo et al.   BMC GENOMICS

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

(2011) Bonnie A Fraser et al.   BMC GENOMICS

Transcriptome profiling of Pinus radiata juvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

(2011) Xinguo Li et al.   BMC GENOMICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum)

(2011) Joanne R Russell et al.   BMC PLANT BIOLOGY

Assembly, Gene Annotation and Marker Development Using 454 Floral Transcriptome Sequences in Ziziphus Celata (Rhamnaceae), a Highly Endangered, Florida Endemic Plant

(2011) C. E. Edwards et al.   DNA RESEARCH

Colonization of the Tibetan Plateau by the homoploid hybrid pine Pinus densata

(2011) BAOSHENG WANG et al.   MOLECULAR ECOLOGY

Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine

(2011) MARK R. LESSER et al.   Molecular Ecology Resources

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Stability in and Correlation between Factors Influencing Genetic Quality of Seed Lots in Seed Orchard of Pinus tabuliformis Carr. over a 12-Year Span

(2011) Wei Li et al.   PLoS One

Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake

(2011) Ilaria Milano et al.   PLoS One

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Combined Proteomic and Transcriptomic Analysis Identifies Differentially Expressed Pathways Associated toPinus radiataNeedle Maturation

(2010) Luis Valledor et al.   JOURNAL OF PROTEOME RESEARCH

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Seasonal reorganization of the xylem transcriptome at different tree ages reveals novel insights into wood formation in Pinus radiata

(2010) Xinguo Li et al.   NEW PHYTOLOGIST

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

(2009) Xinguo Li et al.   BMC GENOMICS

A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)

(2009) Falko Roeding et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

(2008) Gregory Heller et al.   BMC PLANT BIOLOGY

Phylogeography ofPinus tabulaeformisCarr. (Pinaceae), a dominant species of coniferous forest in northern China

(2008) KANGMING CHEN et al.   MOLECULAR ECOLOGY