De Novo Transcriptome Assembly in Chili Pepper (Capsicum frutescens) to Identify Genes Involved in the Biosynthesis of Capsaicinoids

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Transcriptome profiling and molecular marker discovery in red pepper, Capsicum annuum L. TF68

(2011) Fu-Hao Lu et al.   MOLECULAR BIOLOGY REPORTS

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

De Novo Assembly of Expressed Transcripts and Global Analysis of the Phalaenopsis aphrodite Transcriptome

(2011) Chun-lin Su et al.   PLANT AND CELL PHYSIOLOGY

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

ConDeTri - A Content Dependent Read Trimmer for Illumina Data

(2011) Linnéa Smeds et al.   PLoS One

Transcriptome analysis and SNP/SSR marker information of red pepper variety YCM334 and Taean

(2011) Fu-Hao Lu et al.   SCIENTIA HORTICULTURAE

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Molecular biology of capsaicinoid biosynthesis in chili pepper (Capsicum spp.)

(2010) Cesar Aza-González et al.   PLANT CELL REPORTS

The hottest pepper variety in China

(2009) Minghua Deng et al.   GENETIC RESOURCES AND CROP EVOLUTION

Construction of an integrated pepper map using RFLP, SSR, CAPS, AFLP, WRKY, rRAMP, and BAC end sequences

(2009) Heung-Ryul Lee et al.   MOLECULES AND CELLS

A Dynamic Interface for Capsaicinoid Systems Biology

(2009) M. Mazourek et al.   PLANT PHYSIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.)

(2008) Hyoun-Joung Kim et al.   THEORETICAL AND APPLIED GENETICS