Interactions between genotype and environment drive the metabolic phenotype withinEscherichia coliisolates

The metabolic potential of Escherichia coli BL21 in defined and rich medium

(2014) Zhaopeng Li et al.   Microbial Cell Factories

Yeast Proteome Variations Reveal Different Adaptive Responses to Grape Must Fermentation

(2013) Mélisande Blein-Nicolas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in endogenous oxidative stress in Escherichia coli natural isolates during growth in urine

(2012) Cecile Aubron et al.   BMC MICROBIOLOGY

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Phylogenetic distribution of traits associated with plant colonization inEscherichia coli

(2012) Guillaume Méric et al.   ENVIRONMENTAL MICROBIOLOGY

Gene Expression Profiling of Skeletal Muscle of Nursing Piglets

(2012) Caode Jiang et al.   International Journal of Biological Sciences

Linking Post-Translational Modifications and Variation of Phenotypic Traits

(2012) Warren Albertin et al.   MOLECULAR & CELLULAR PROTEOMICS

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

(2012) J. M. Buescher et al.   SCIENCE

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli

(2012) Selwyn Quan et al.   PLoS Genetics

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities

(2011) Yao Fu et al.   BMC BIOINFORMATICS

The evolution of metabolic networks of E. coli

(2011) David J Baumler et al.   BMC Systems Biology

Core and Panmetabolism in Escherichia coli

(2011) G. Vieira et al.   JOURNAL OF BACTERIOLOGY

The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity

(2011) V. SABARLY et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Integrated Transcriptomic and Proteomic Analysis of the Physiological Response ofEscherichia coliO157:H7 Sakai to Steady-state Conditions of Cold and Water Activity Stress

(2011) Chawalit Kocharunchitt et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

(2011) B. R. B. Haverkorn van Rijsewijk et al.   Molecular Systems Biology

Proteomic analysis of Escherichia coli associated with urinary tract infections

(2011) Andrew Smith et al.   PROTEOMICS

Proteomic analysis of multidrug resistant Escherichia coli strains from scouring calves

(2011) Ablesh Gautam et al.   VETERINARY MICROBIOLOGY

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

Regulation of phosphate starvation responses in higher plants

(2010) Xiao Juan Yang et al.   ANNALS OF BOTANY

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

Bacterial adaptation through distributed sensing of metabolic fluxes

(2010) Oliver Kotte et al.   Molecular Systems Biology

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution

(2010) Jean-François Gout et al.   PLoS Genetics

Genetic Basis of Growth Adaptation of Escherichia coli after Deletion of pgi, a Major Metabolic Gene

(2010) Pep Charusanti et al.   PLoS Genetics

Host Imprints on Bacterial Genomes—Rapid, Divergent Evolution in Individual Patients

(2010) Jaroslaw Zdziarski et al.   PLoS Pathogens

Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections

(2010) Maxime Levert et al.   PLoS Pathogens

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Mucosal Immunization with Iron Receptor Antigens Protects against Urinary Tract Infection

(2009) Christopher J. Alteri et al.   PLoS Pathogens

The CTX-M-15-producing Escherichia coli diffusing clone belongs to a highly virulent B2 phylogenetic subgroup

(2008) Olivier Clermont et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bet-hedging and epigenetic inheritance in bacterial cell development

(2008) J.-W. Veening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA