CCBuilder 2.0: Powerful and accessible coiled-coil modeling

The molecular architecture of lamins in somatic cells

(2017) Yagmur Turgay et al.   NATURE

One-step design of a stable variant of the malaria invasion protein RH5 for use as a vaccine immunogen

(2017) Ivan Campeotto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coiled Coils – A Model System for the 21st Century

(2017) Andrei N. Lupas et al.   TRENDS IN BIOCHEMICAL SCIENCES

Structural characterization suggests models for monomeric and dimeric forms of full-length ezrin

(2016) J. M. Phang et al.   BIOCHEMICAL JOURNAL

Identification of BECN1 and ATG14 Coiled-Coil Interface Residues That Are Important for Starvation-Induced Autophagy

(2016) Yang Mei et al.   BIOCHEMISTRY

Design and engineering of artificial oxygen-activating metalloenzymes

(2016) Flavia Nastri et al.   CHEMICAL SOCIETY REVIEWS

Structural determinants governing S100A4-induced isoform-selective disassembly of nonmuscle myosin II filaments

(2016) Bence Kiss et al.   FEBS Journal

New intronic splicing mutation in the LMNA gene causing progressive cardiac conduction defects and variable myopathy

(2016) Y. Rogozhina et al.   GENE

A monodisperse transmembrane α-helical peptide barrel

(2016) Kozhinjampara R. Mahendran et al.   Nature Chemistry

Installing hydrolytic activity into a completely de novo protein framework

(2016) Antony J. Burton et al.   Nature Chemistry

Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension

(2016) James T. MacDonald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design of structurally distinct proteins using strategies inspired by evolution

(2016) T. M. Jacobs et al.   SCIENCE

Balance between Coiled-Coil Stability and Dynamics Regulates Activity of BvgS Sensor Kinase in Bordetella

(2016) E. Lesne et al.   mBio

Super-resolution microscopy reveals a preformed NEMO lattice structure that is collapsed in incontinentia pigmenti

(2016) Janine Scholefield et al.   Nature Communications

De novo protein design: how do we expand into the universe of possible protein structures?

(2015) Derek N Woolfson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Sensor Function for Butyrophilin 3A1 in Prenyl Pyrophosphate Stimulation of Human Vγ2Vδ2 T Cells

(2015) Hong Wang et al.   JOURNAL OF IMMUNOLOGY

Modular Design of Self-Assembling Peptide-Based Nanotubes

(2015) Natasha C. Burgess et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Exploring the repeat protein universe through computational protein design

(2015) TJ Brunette et al.   NATURE

Data-Driven Prediction and Design of bZIP Coiled-Coil Interactions

(2015) Vladimir Potapov et al.   PLoS Computational Biology

CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies

(2014) C. W. Wood et al.   BIOINFORMATICS

High performance in silico virtual drug screening on many-core processors

(2014) Simon McIntosh-Smith et al.   INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS

A coiled-coil domain acts as a molecular ruler to regulate O-antigen chain length in lipopolysaccharide

(2014) Gregor Hagelueken et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

De novo design of a transmembrane Zn2+-transporting four-helix bundle

(2014) Nathan H. Joh et al.   SCIENCE

Computational design of water-soluble α-helical barrels

(2014) Andrew R. Thomson et al.   SCIENCE

High thermodynamic stability of parametrically designed helical bundles

(2014) Po-Ssu Huang et al.   SCIENCE

Rational Design of Helical Nanotubes from Self-Assembly of Coiled-Coil Lock Washers

(2013) Chunfu Xu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reprogramming an ATP-driven protein machine into a light-gated nanocage

(2013) Daniel Hoersch et al.   Nature Nanotechnology

LOGICOIL—multi-state prediction of coiled-coil oligomeric state

(2012) Thomas L. Vincent et al.   BIOINFORMATICS

New currency for old rope: from coiled-coil assemblies to α-helical barrels

(2012) Derek N Woolfson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A Basis Set of de Novo Coiled-Coil Peptide Oligomers for Rational Protein Design and Synthetic Biology

(2012) Jordan M. Fletcher et al.   ACS Synthetic Biology

SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences

(2011) C. T. Armstrong et al.   BIOINFORMATICS

Benchmarking Energy Efficiency, Power Costs and Carbon Emissions on Heterogeneous Systems

(2011) S. McIntosh-Smith et al.   COMPUTER JOURNAL

Tandem repeats in proteins: From sequence to structure

(2011) Andrey V. Kajava   JOURNAL OF STRUCTURAL BIOLOGY

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

(2010) S. Chaudhury et al.   BIOINFORMATICS

The Evolution and Structure Prediction of Coiled Coils across All Genomes

(2010) Owen J.L. Rackham et al.   JOURNAL OF MOLECULAR BIOLOGY

Probing Designability via a Generalized Model of Helical Bundle Geometry

(2010) Gevorg Grigoryan et al.   JOURNAL OF MOLECULAR BIOLOGY

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Probing the “Dark Matter” of Protein Fold Space

(2009) William R. Taylor et al.   STRUCTURE

Macromolecular Modeling with Rosetta

(2008) Rhiju Das et al.   Annual Review of Biochemistry

A Periodic Table of Coiled-Coil Protein Structures

(2008) Efrosini Moutevelis et al.   JOURNAL OF MOLECULAR BIOLOGY

CC+: a relational database of coiled-coil structures

(2008) O. D. Testa et al.   NUCLEIC ACIDS RESEARCH

De Novo Computational Design of Retro-Aldol Enzymes

(2008) L. Jiang et al.   SCIENCE