CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies

Accessibility, Reactivity, and Selectivity of Side Chains within a Channel of de Novo Peptide Assembly

(2013) Antony J. Burton et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

LOGICOIL—multi-state prediction of coiled-coil oligomeric state

(2012) Thomas L. Vincent et al.   BIOINFORMATICS

New currency for old rope: from coiled-coil assemblies to α-helical barrels

(2012) Derek N Woolfson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Principles for designing ideal protein structures

(2012) Nobuyasu Koga et al.   NATURE

A de novo peptide hexamer with a mutable channel

(2011) Nathan R Zaccai et al.   Nature Chemical Biology

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

(2010) S. Chaudhury et al.   BIOINFORMATICS

Probing Designability via a Generalized Model of Helical Bundle Geometry

(2010) Gevorg Grigoryan et al.   JOURNAL OF MOLECULAR BIOLOGY

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

(2009) Anna Lobley et al.   BIOINFORMATICS

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A Periodic Table of Coiled-Coil Protein Structures

(2008) Efrosini Moutevelis et al.   JOURNAL OF MOLECULAR BIOLOGY

CC+: a relational database of coiled-coil structures

(2008) O. D. Testa et al.   NUCLEIC ACIDS RESEARCH

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A normalized root-mean-spuare distance for comparing protein three-dimensional structures

(2002) Oliviero Carugo et al.   PROTEIN SCIENCE