4.6 Article

New intronic splicing mutation in the LMNA gene causing progressive cardiac conduction defects and variable myopathy

Journal

GENE
Volume 595, Issue 2, Pages 202-206

Publisher

ELSEVIER
DOI: 10.1016/j.gene.2016.10.001

Keywords

Lamin; Lamin A/C-dependent limb-girdle muscular; dystrophy type 1B; Defect splice site mutation; Deep intronic mutation

Funding

  1. Russian Science Foundation [16-15-10421]
  2. Russian Science Foundation [16-15-10421] Funding Source: Russian Science Foundation

Ask authors/readers for more resources

Background: Most of mutations in the LMNA gene are unique and have been found in only a few unrelated families. The clinical interpretation of new genetic variants, especially beyond the coding area and canonical splice sites, is proving to be difficult and requires advanced investigation. Methods: This study included patients with progressive cardiac conduction defects with neuromuscular involvement. The clinical evaluation included medical history and 24-h Holter monitoring. The genetic evaluation included mutation screening in the LMNA gene by the Sanger sequence. Sanger sequencing was followed by RT-PCR of the target fragment of cDNA. In silico modeling was performed with CCBulder and Modeller software. Results: The diagnosis of limb-girdle muscular dystrophy type 1B (LGMD1B) was established. The new intronic variant c.513 + 45 T > G was found in the LMNA gene in the proband and affected daughter. The insertion of 45 bp was confirmed in the proband's cDNA. The structural and possible functional effects of the aberrant protein were predicted. Conclusions: Variant c.513 + 45 T > G in the LMNA gene likely translates into the longer lamin A/C proteins with additional 15 amino acids. This variant is thought to be pathogenic. Intronic variants in the LMNA gene located beside canonic splice sites may be responsible for some genotype-negative cases with clinical phenotype of laminopathies. (C) 2016 Elsevier B.V. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Genetics & Heredity

Allelic Dropout Is a Common Phenomenon That Reduces the Diagnostic Yield of PCR-Based Sequencing of Targeted Gene Panels

Anna G. Shestak, Anna A. Bukaeva, Siamak Saber, Elena Zaklyazminskaya

Summary: Primary cardiomyopathies are monogenic disorders with multiple alleles influencing pathogenesis. Next-generation sequencing has improved DNA diagnostics but genetic testing for CMPs still has a diagnostic yield below 60%. The study identified allelic dropout as a common issue impacting diagnostic yield in genetic testing for primary cardiomyopathies.

FRONTIERS IN GENETICS (2021)

Article Genetics & Heredity

Mixed-Etiology Restrictive Cardiomyopathy (Desminopathy and Hemochromatosis) with Complex Liver Lesions

Yulia Lutokhina, Olga Blagova, Alexander Panferov, Vsevolod Sedov, Evgeniya Kogan, Tatiana Nekrasova, Alexander Nedostup, Elena Zaklyazminskaya

Summary: Translation: A case study of a male patient with restrictive cardiomyopathy (RCM) and elevated serum iron levels and transferrin saturation percentage is reported. Mutations in desmin (DES) and hemochromatosis gene (HFE1) were identified. Liver biopsy confirmed drug-induced injury, subcompensated heart failure, and hemosiderin accumulation. Therefore, other less likely causes should be taken into consideration even if one obvious cause has been identified.

GENES (2022)

Article Genetics & Heredity

Variable Clinical Appearance of the Kir2.1 Rare Variants in Russian Patients with Long QT Syndrome

Elena Zaklyazminskaya, Margarita Polyak, Anna Shestak, Mariam Sadekova, Vera Komoliatova, Irina Kiseleva, Leonid Makarov, Dmitriy Podolyak, Grigory Glukhov, Han Zhang, Denis Abramochkin, Olga S. Sokolova

Summary: This study identified three rare genetic variants in the KCNJ2 gene, one of which was reclassified as a variant of unknown significance. LQT7 is a rare form of LQTS in Russia.

GENES (2022)

Article Cardiac & Cardiovascular Systems

Noncompact Myocardium with Dilated Phenotype: Manifestations, Treatment and Outcomes in Comparison with Other Forms of Dilated Cardiomyopathy Syndrome

O. Blagova, E. Pavlenko, N. V. Varionchik, V. P. Sedov, N. Gagarina, E. A. Mershina, M. E. Polyak, E. Zaklyazminskaya, A. Nedostup

Summary: The study aimed to investigate the position of NCM in the structure of DCM, its clinical features, and its influence on prognosis compared with other forms of DCM syndrome. The results showed that NCM is an independent form of DCM syndrome, characterized by a higher frequency of pathogenic mutations, arrhythmic events, worse response to cardiotropic therapy, and a higher frequency of intracardiac thrombosis.

RATIONAL PHARMACOTHERAPY IN CARDIOLOGY (2022)

Article Genetics & Heredity

Different Phenotypes of Sarcomeric MyBPC3-Cardiomyopathy in the Same Family: Hypertrophic, Left Ventricular Noncompaction and Restrictive Phenotypes (in Association with Sarcoidosis)

Olga Blagova, Ekaterina Pavlenko, Vsevolod Sedov, Evgeniya Kogan, Margarita Polyak, Elena Zaklyazminskaya, Yulia Lutokhina

Summary: The same variants in sarcomeric genes can lead to different cardiomyopathies within the same family. This case report describes a familial sarcomeric cardiomyopathy caused by a specific pathogenic variant in the cardiac myosin-binding protein C gene, affecting multiple generations.

GENES (2022)

Article Biochemistry & Molecular Biology

De Novo Asp219Val Mutation in Cardiac Tropomyosin Associated with Hypertrophic Cardiomyopathy

Andrey K. Tsaturyan, Elena V. Zaklyazminskaya, Margarita E. Polyak, Galina V. Kopylova, Daniil V. Shchepkin, Anastasia M. Kochurova, Anastasiia D. Gonchar, Sergey Y. Kleymenov, Natalia A. Koubasova, Sergey Y. Bershitsky, Alexander M. Matyushenko, Dmitrii I. Levitsky

Summary: The study identified a new variant in the TPM1 gene, which is associated with HCM. The variant increased the thermal stability of the Tpm molecule and its affinity for F-actin was unaffected. However, it increased the Ca2+ sensitivity of filament sliding and impaired its inhibition at low Ca2+ concentration.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Article Cardiac & Cardiovascular Systems

Rendu-Osler-Weber Disease with High Pulmonary Hypertension and Interstitial Lung Disease

Y. A. Lutokhina, O. V. Blagova, P. O. Savina, E. V. Zaklyazminskaya

Summary: A 64-year-old female with a family history of hereditary hemorrhagic telangiectasia (HHT) presented with dyspnea and leg edema. Despite treatment, her heart failure worsened after each episode of massive blood loss. Echocardiography revealed high pulmonary hypertension. Interstitial lung lesions were detected on CT scan. The patient's condition improved with cardiotropic and diuretic therapy, but she ultimately died from acute progression of pulmonary hypertension. Timely diagnosis and treatment of pulmonary hypertension in HHT are crucial for prognosis.

RATIONAL PHARMACOTHERAPY IN CARDIOLOGY (2023)

Article Biochemistry & Molecular Biology

Novel Mutation Glu98Lys in Cardiac Tropomyosin Alters Its Structure and Impairs Myocardial Relaxation

Alexander M. Matyushenko, Victoria V. Nefedova, Anastasia M. Kochurova, Galina V. Kopylova, Natalia A. Koubassova, Anna G. Shestak, Daria S. Yampolskaya, Daniil V. Shchepkin, Sergey Y. Kleymenov, Natalia S. Ryabkova, Ivan A. Katrukha, Sergey Y. Bershitsky, Elena V. Zaklyazminskaya, Andrey K. Tsaturyan, Dmitrii I. Levitsky

Summary: We characterized a novel genetic variant c.292G > A (p.E98K) in the TPM1 gene encoding cardiac tropomyosin 1.1 isoform (Tpm1.1), which is associated with complex cardiomyopathy, conduction dysfunction, and neuromuscular involvement. We found that the E98K substitution in Tpm1.1 significantly destabilizes its structure and impairs its regulatory properties. This study provides insights into the mechanism by which the E98K Tpm mutation affects myocardial function and relaxation.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Meeting Abstract Cardiac & Cardiovascular Systems

Combination of arrhythmogenic right ventricular dysplasia with left ventricular non-compaction as a special form of cardiomyopathy: clinic, diagnostics, genetic, natural course

Y. A. Lutokhina, O. V. Blagova, A. G. Shestak, M. E. Polyak, A. A. Bukaeva, E. V. Zaklyazminskaya, N. V. Varionchik, V. P. Sedov, E. A. Kogan, S. A. Alexandrova, A. V. Nedostup

EUROPEAN HEART JOURNAL (2021)

Review Crystallography

The Integrative Approach to Study of the Structure and Functions of Cardiac Voltage-Dependent Ion Channels

Y. G. Kacher, M. G. Karlova, G. S. Glukhov, H. Zhang, E. V. Zaklyazminskaya, G. Loussouarn, O. S. Sokolova

Summary: Membrane proteins, especially ion channels, became the focus of structural proteomics in the mid-20th century. Studies on ion channels involve diverse methods, including structural (such as X-ray crystallography, cryoelectron microscopy, and patch clamp) and functional approaches. The contribution of electrophysiological studies and molecular dynamics, along with advancements in X-ray crystallography and cryoelectron microscopy, have enabled the obtainment of atomic structure of ion channels.

CRYSTALLOGRAPHY REPORTS (2021)

Meeting Abstract Biochemistry & Molecular Biology

Influence of the missense Ile337Met mutation on the functioning of the cardiac Kv7.1 channel

Y. Kacher, M. Karlova, V. Rusinova, D. Abramochkin, E. Zaklyazminskaya, O. S. Sokolova

FEBS OPEN BIO (2021)

Meeting Abstract Biophysics

Electrophysiological Analysis of the Cardiac KV Channel with the New Point Mutation Found in the Patient with LQTS

Julia Kacher, Maria Karlova, Valeria Rusinova, Denis Abramochkin, Elena Zaklyazminskaya, Olga Sokolova

BIOPHYSICAL JOURNAL (2021)

Article Cardiac & Cardiovascular Systems

Three Myocardial Diseases in One Heart: Arrhythmogenic Right Ventricular Cardiomyopathy, Left Ventricular Noncompaction and Myocarditis

Yulia Lutokhina, Olga Blagova, Nadezhda Varionchik, Svetlana Alexandrova, Nina Gagarina, Eugenia Kogan, Vsevolod Sedov, Anna Shestak, Elena Zaklyazminskaya, Alexander Nedostup

Summary: In a young patient with arrhythmogenic syncope and dilated cardiomyopathy (DCM), a diagnosis of arrhythmogenic right ventricular cardiomyopathy (ARVC) and left ventricular noncompaction (LVNC) with biopsy-proven virus-negative chronic myocarditis was made. The use of immunosuppressive therapy stabilized heart function and decreased the risk of arrhythmic events. The combination of myocarditis and primary cardiomyopathy is not rare in DCM syndrome.

CARDIOGENETICS (2021)

Article Genetics & Heredity

Comparative alternative polyadenylation profiles in differentiated adipocytes of subcutaneous and intramuscular fat tissue in cattle

Xiangge Meng, Chengping Li, Yu Hei, Xiang Zhou, Guoli Zhou

Summary: The study used IVT-SAPAS sequencing to analyze the dynamic changes of APA sites during adipogenesis in bovine subcutaneous preadipocytes and intramuscular preadipocytes. The results showed that APA plays an important role in adipocyte differentiation, and UTR-APA switching genes have different trends, with intramuscular preadipocytes tending to use shorter 3'UTR for differentiation. TRIB3, WWTR1, and INSIG1 play important roles in intramuscular preadipocyte differentiation.
Article Genetics & Heredity

A GCC repeat in RAB26 undergoes natural selection in human and harbors divergent genotypes in late-onset Alzheimer's disease

S. Alizadeh, S. Khamse, N. Tajeddin, H. R. Khorram Khorshid, A. Delbari, M. Ohadi

Summary: This study identifies a specific genotype at a CG-rich trinucleotide short tandem repeat (STR) locus that is associated with late-onset neurocognitive disorders such as Alzheimer's disease (AD).
Article Genetics & Heredity

Identification of potential biomarkers and infiltrating immune cells from scalp psoriasis

Shougang Liu, Zhe Zhuang, Fanghua Liu, Xiuqing Yuan, Zeqiao Zhang, Xiaoqian Liang, Xinhui Li, Yongfeng Chen

Summary: This study investigated the effect and mechanism of RPL9 and TIFA in scalp psoriasis, and identified RPL9 as a potential therapeutic target for scalp psoriasis.
Article Genetics & Heredity

Natural hair color and skin cancers: A two-sample Mendelian randomization study

Shiting Wang, Jiaqi Chen, Zhichao Jin, Ying Xing, Ruiping Wang

Summary: This study suggests a causal association between hair color and skin cancers, with light hair colors (red, blonde, and light brown) being associated with an increased risk and dark brown hair being associated with a decreased risk.
Article Genetics & Heredity

Genetic diversity and natural selection of apical membrane antigen-1 (ama-1) in Cameroonian Plasmodium falciparum isolates

Joseph Hawadak, Loick Pradel Kojom Foko, Rodrigue Roman Dongang Nana, Karmveer Yadav, Veena Pande, Aparup Das, Vineeta Singh

Summary: This study investigates the genetic diversity and natural selection of the Pfama-1 gene in Plasmodium falciparum isolates from Cameroon. The study finds a considerable nucleotide and haplotype diversity, as well as specific mutations in Cameroonian isolates. Positive diversifying selection and the identification of selected codon sites suggest the potential implication of these genetic variations in host immune pressure and parasite-binding complex modulation. The findings provide valuable baseline data for malaria vaccine design.
Article Genetics & Heredity

Genome-wide regulation of Pol II, FACT, and Spt6 occupancies by RSC in Saccharomyces cerevisiae

Emily Biernat, Mansi Verma, Chhabi K. Govind

Summary: RSC is an essential ATP-dependent chromatin remodeling complex in Saccharomyces cerevisiae. It regulates nucleosome-depleted regions (NDRs) by sliding flanking nucleosomes away from NDRs. Depletion of RSC leads to nucleosome encroachment in NDRs and transcription initiation defects. The study compared the effects of catalytic-dead Sth1 and rapid depletion of Sth1 on transcription. Rapid depletion of Sth1 reduces recruitment of TBP and Pol II, while the catalytic-dead mutant exhibits a severe reduction in TBP binding but accumulates Pol II in coding regions. The results suggest a role for RSC in transcription elongation and termination processes.
Article Genetics & Heredity

GhTPPA_2 enhancement of tobacco sugar accumulation and drought tolerance

Yunxiao Wei, Yuhan Song, Muhammad Aamir Khan, Chengzhen Liang, Zhigang Meng, Yuan Wang, Sandui Guo, Rui Zhang

Summary: This study analyzed the GhTPP protein family in upland cotton for the first time and identified the important role of GhTPPA_2 in regulating sugar metabolism, improving soluble sugar accumulation, and drought stress tolerance.
Article Genetics & Heredity

Identification of a potential signature to predict the risk of postmenopausal osteoporosis

Yannan Geng, Rui Shao, Tiantong Xu, Lilong Zhang

Summary: A novel risk model based on SCUBE3, TNNC1, SPON1, SEPT12 and ULBP1 genes was developed for predicting PMOP risk, with higher risk score indicating higher risk of suffering from PMOP. Significant differences in signaling pathway activities were observed between the high-risk score group and the low-risk score group.
Article Genetics & Heredity

RNA-seq analysis reveals prenatal alcohol exposure is associated with placental inflammatory cells and gene expression

Randy P. Williams, Corina Lesseur, Haoxiang Cheng, Qian Li, Maya Deyssenroth, Christopher D. Molteno, Ernesta M. Meintjes, Sandra W. Jacobson, Joseph L. Jacobson, Helen Wainwright, Ke Hao, Jia Chen, R. Colin Carter

Summary: The study suggests that heavy alcohol exposure during pregnancy may impact the proportion of fetal placental villi macrophages and increase the expression of inflammatory genes. Further research is needed to explore these effects and evaluate the potential functional roles of placental inflammation in FASD.
Article Genetics & Heredity

miR-124-3p regulates the involvement of Ptpn1 in testicular development and spermatogenesis in mouse

Lvjing Luo, Lishuang Sun, Shu Li, Huiting Liu, Zhengyu Chen, Shi Huang, Yinyin Mo, Genliang Li

Summary: This study analyzed the expression of Ptpn1 and miR-124-3p in testicular tissues of mice and investigated their regulatory relationship. The results showed that Ptpn1 expression was up-regulated in adult mouse testis compared to juvenile mouse testis, while miR-124-3p expression showed an opposite pattern. Further analysis suggested that the down-regulation of miR-124-3p may contribute to the high expression of Ptpn1 in adult mouse testis.
Article Genetics & Heredity

Expression of miR-22 profiling in colorectal normal-adenoma-carcinoma sequence

Gairui Li, Dan Zhao, Xiaolin Peng, Yashuang Zhao

Summary: MiRNA-22 shows potential as a candidate for early diagnosis of colorectal cancer (CRC). The study found higher miR-22 expression levels in the CRC and CRA groups, suggesting its potential as a biomarker for CRC early screening.
Article Genetics & Heredity

MSTRG3207 promotes apoptosis in zebrafish ZF4 cells via sponging dre-miR-736/bbc3/LOC101885512 axis during cold acclimation

Zhongqiu Zhu, Qianting Yang, Xiaoying Tian, Da Man, Jian Wang, Junfang Zhang, Bingshe Han

Summary: This study constructed a ceRNA network mediated by lncRNAs in cold-acclimated zebrafish ZF4 cells and revealed that upregulation of MSTRG3207 promotes apoptosis by sponging dre-miR-736 during cold acclimation.
Article Genetics & Heredity

Whole-genome resequencing confirms the genetic effects of dams on an endangered fish Hemibagrus guttatus (Siluriformes: Bagridae): A case study in a tributary of the Pearl River

Weitao Chen, Denggao Xiang, Shang Gao, Shuli Zhu, Zhi Wu, Yuefei Li, Jie Li

Summary: Dam construction has negatively impacted the genetic diversity and structure of fish populations. This case study on the endangered Hemibagrus guttatus found low genetic diversity, high levels of inbreeding, and decreasing population size in fragmented populations. Genetic structure and differentiation were also observed, indicating the influence of dams on these fish populations.
Article Genetics & Heredity

Mapping the genetic architecture of idiopathic pulmonary fibrosis: Meta-analysis and epidemiological evidence of case-control studies

Pooja Singh, Debleena Guin, Bijay Pattnaik, Ritushree Kukreti

Summary: Through systematic literature review and meta-analysis, it was found that idiopathic pulmonary fibrosis is significantly associated with 222 polymorphisms in 118 genes. Four polymorphisms - rs35705950/MUC5B, rs2736100/TERT, rs2076295/DSP, and rs111521887/TOLLIP, exhibited substantial epidemiological evidence supporting their association with IPF risk.
Article Genetics & Heredity

Age-different BMSCs-derived exosomes accelerate tendon-bone interface healing in rotator cuff tears model

Jianping Zhang, Zhijun Cai, Fanzhe Feng, Yufeng Peng, Yi Cui, Yongiqing Xu

Summary: This study found that exosomes secreted by young BMSCs can promote the healing of tendon-bone interface after rotator cuff tears. These exosomes can improve extracellular matrix remodeling, osteogenic differentiation, angiogenesis, and stemness of tendon-derived stem cells (TDSCs). The exosomes from young BMSCs have better effects compared to those from aged BMSCs.