Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa

Bayesian Network Webserver: a comprehensive tool for biological network modeling

(2013) Jesse D. Ziebarth et al.   BIOINFORMATICS

Novel Proteins Required for Meiotic Silencing by Unpaired DNA and siRNA Generation inNeurospora crassa

(2013) Thomas M. Hammond et al.   GENETICS

Sexual reproduction and mating-type–mediated strain development in the penicillin-producing fungusPenicillium chrysogenum

(2013) Julia Böhm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Network of HMG-box Transcription Factors Regulates Sexual Cycle in the Fungus Podospora anserina

(2013) Jinane Ait Benkhali et al.   PLoS Genetics

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

A gene expression atlas of the domestic pig

(2012) Tom C Freeman et al.   BMC BIOLOGY

Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi

(2012) Kristiina Nygren et al.   BMC EVOLUTIONARY BIOLOGY

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

(2012) Ines Teichert et al.   BMC GENOMICS

RBE controls microRNA164 expression to effect floral organogenesis

(2012) T. Huang et al.   DEVELOPMENT

Genetic and Physical Interactions between Gα Subunits and Components of the Gβγ Dimer of Heterotrimeric G Proteins in Neurospora crassa

(2012) Susan Won et al.   EUKARYOTIC CELL

Sex-specific gene expression during asexual development of Neurospora crassa

(2012) Zheng Wang et al.   FUNGAL GENETICS AND BIOLOGY

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

(2012) Usha Rani Sikhakolli et al.   FUNGAL GENETICS AND BIOLOGY

Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa

(2012) Zheng Wang et al.   FUNGAL GENETICS AND BIOLOGY

Roles for Receptors, Pheromones, G Proteins, and Mating Type Genes During Sexual Reproduction in Neurospora crassa

(2012) H. Kim et al.   GENETICS

A transcriptomic hourglass in plant embryogenesis

(2012) Marcel Quint et al.   NATURE

Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation

(2012) Shinji Honda et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Importance of MAP Kinases during Protoperithecial Morphogenesis in Neurospora crassa

(2012) Alexander Lichius et al.   PLoS One

Neurospora COP9 Signalosome Integrity Plays Major Roles for Hyphal Growth, Conidial Development, and Circadian Function

(2012) Zhipeng Zhou et al.   PLoS Genetics

The Fungi: 1, 2, 3 … 5.1 million species?

(2011) Meredith Blackwell   AMERICAN JOURNAL OF BOTANY

RIC8 Is a Guanine-Nucleotide Exchange Factor for Gα Subunits That Regulates Growth and Development inNeurospora crassa

(2011) Sara J. Wright et al.   GENETICS

Genome-Wide Gene Expression Profiling of Fertilization Competent Mycelium in Opposite Mating Types in the Heterothallic Fungus Podospora anserina

(2011) Frédérique Bidard et al.   PLoS One

SAD-3, a Putative Helicase Required for Meiotic Silencing by Unpaired DNA, Interacts with Other Components of the Silencing Machinery

(2011) Thomas M. Hammond et al.   G3-Genes Genomes Genetics

Three reasons to re-evaluate fungal diversity ‘on Earth and in the ocean’

(2011) David Bass et al.   Fungal Biology Reviews

LOX: inferring Level Of eXpression from diverse methods of census sequencing

(2010) Z. Zhang et al.   BIOINFORMATICS

Multi-targeted priming for genome-wide gene expression assays

(2010) Aleksandra B Adomas et al.   BMC GENOMICS

Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity

(2010) Elizabeth H. Bayne et al.   CELL

Functional Characterization ofMAT1-1-Specific Mating-Type Genes in the Homothallic Ascomycete Sordaria macrospora Provides New Insights into Essential and Nonessential Sexual Regulators

(2010) V. Klix et al.   EUKARYOTIC CELL

Perithecium morphogenesis in Sordaria macrospora

(2010) Kathryn M. Lord et al.   FUNGAL GENETICS AND BIOLOGY

Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

QIP, a Protein That Converts Duplex siRNA Into Single Strands, Is Required for Meiotic Silencing by Unpaired DNA

(2010) Hua Xiao et al.   GENETICS

DNA methylation and the formation of heterochromatin in Neurospora crassa

(2010) M R Rountree et al.   HEREDITY

The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research

(2010) K. McCluskey et al.   JOURNAL OF BIOSCIENCES

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Tracing the Origin of the Fungal α1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution

(2010) Tom Martin et al.   PLoS One

De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis

(2010) Minou Nowrousian et al.   PLoS Genetics

DNA Methylation and Normal Chromosome Behavior in Neurospora Depend on Five Components of a Histone Methyltransferase Complex, DCDC

(2010) Zachary A. Lewis et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model

(2009) Jin Hwan Do et al.   BMC GENOMICS

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle

(2009) Pierre R Bushel et al.   BMC Systems Biology

The Fungi

(2009) Jason E. Stajich et al.   CURRENT BIOLOGY

The filamentous fungal gene expression database (FFGED)

(2009) Zhang Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Neurospora as a model fungus for studies in cytogenetics and sexual biology at Stanford

(2009) Namboori B. Raju   JOURNAL OF BIOSCIENCES

Relationship between Phylogenetic Distribution and Genomic Features in Neurospora crassa

(2009) Takao Kasuga et al.   PLoS One

Direct Interaction between DNA Methyltransferase DIM-2 and HP1 Is Required for DNA Methylation in Neurospora crassa

(2008) S. Honda et al.   MOLECULAR AND CELLULAR BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS