The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection
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Title
The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection
Authors
Keywords
RNA editing, Drosophila melanogaster, Invertebrate genomics, Drosophila, Transcriptome analysis, Evolutionary genetics, Genomic databases, Molecular evolution
Journal
PLoS Genetics
Volume 12, Issue 7, Pages e1006191
Publisher
Public Library of Science (PLoS)
Online
2016-07-29
DOI
10.1371/journal.pgen.1006191
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Note: Only part of the references are listed.- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
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- (2015) Shahar Alon et al. eLife
- A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
- (2014) M. Sakurai et al. GENOME RESEARCH
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- (2014) Guixia Xu et al. MOLECULAR BIOLOGY AND EVOLUTION
- Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments
- (2014) Zhipeng Lu et al. NUCLEIC ACIDS RESEARCH
- Human coding RNA editing is generally nonadaptive
- (2014) G. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNA-Editing Enzyme ADAR1 Controls Innate Immune Responses to RNA
- (2014) Niamh M. Mannion et al. Cell Reports
- RNA Editome in Rhesus Macaque Shaped by Purifying Selection
- (2014) Jia-Yu Chen et al. PLoS Genetics
- A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes
- (2013) L. Bazak et al. GENOME RESEARCH
- Identifying RNA editing sites using RNA sequencing data alone
- (2013) Gokul Ramaswami et al. NATURE METHODS
- Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
- (2013) Georges St Laurent et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Characterization and comparison of human nuclear and cytosolic editomes
- (2013) L. Chen PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA editing ineagpotassium channels
- (2012) Mary Y. Ryan et al. Channels
- Adar is essential for optimal presynaptic function
- (2012) Carolina Maldonado et al. MOLECULAR AND CELLULAR NEUROSCIENCE
- Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila
- (2012) Joseph Rodriguez et al. MOLECULAR CELL
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RNA Editing Underlies Temperature Adaptation in K+ Channels from Polar Octopuses
- (2012) S. Garrett et al. SCIENCE
- Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila
- (2012) Peter Smibert et al. Cell Reports
- High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
- (2012) Petr Daneck et al. GENOME BIOLOGY
- Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
- (2011) J. H. Bahn et al. GENOME RESEARCH
- FlyBase 101 - the basics of navigating FlyBase
- (2011) P. McQuilton et al. NUCLEIC ACIDS RESEARCH
- The Ecoresponsive Genome of Daphnia pulex
- (2011) J. K. Colbourne et al. SCIENCE
- GLOOME: gain loss mapping engine
- (2010) O. Cohen et al. BIOINFORMATICS
- Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- (2010) Z. J. Lu et al. GENOME RESEARCH
- The developmental transcriptome of Drosophila melanogaster
- (2010) Brenton R. Graveley et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Database resources of the National Center for Biotechnology Information
- (2010) E. W. Sayers et al. NUCLEIC ACIDS RESEARCH
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- RNA editing: a driving force for adaptive evolution?
- (2009) Willemijn M. Gommans et al. BIOESSAYS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Large-scale mRNA sequencing determines global regulation of RNA editing during brain development
- (2009) H. Wahlstedt et al. GENOME RESEARCH
- Origins and evolution of ADAR-mediated RNA editing
- (2009) Yongfeng Jin et al. IUBMB LIFE
- Inference and Characterization of Horizontally Transferred Gene Families Using Stochastic Mapping
- (2009) O. Cohen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unlocking the secrets of the genome
- (2009) Susan E. Celniker et al. NATURE
- Presynaptic α2δ-3 is required for synaptic morphogenesis independent of its Ca2+-channel functions
- (2009) Peri T Kurshan et al. NATURE NEUROSCIENCE
- Recognition and coupling of A-to-I edited sites are determined by the tertiary structure of the RNA
- (2009) Mats Ensterö et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
- (2009) J. B. Li et al. SCIENCE
- straightjacketis required for the synaptic stabilization ofcacophony, a voltage-gated calcium channel α1subunit
- (2008) Cindy V. Ly et al. JOURNAL OF CELL BIOLOGY
- Mutations in a Drosophila 2 Voltage-Gated Calcium Channel Subunit Reveal a Crucial Synaptic Function
- (2008) D. K. Dickman et al. JOURNAL OF NEUROSCIENCE
- Frequency and fate of microRNA editing in human brain
- (2008) Y. Kawahara et al. NUCLEIC ACIDS RESEARCH
- FLYSNPdb: a high-density SNP database of Drosophila melanogaster
- (2008) Doris Chen et al. NUCLEIC ACIDS RESEARCH
- RNA editing in regulating gene expression in the brain
- (2007) James E.C. Jepson et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
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