Advances on plant-pathogen interactions from molecular toward systems biology perspectives
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Advances on plant-pathogen interactions from molecular toward systems biology perspectives
Authors
Keywords
-
Journal
PLANT JOURNAL
Volume 90, Issue 4, Pages 720-737
Publisher
Wiley
Online
2016-11-22
DOI
10.1111/tpj.13429
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Plant Microbiota: Systems-Level Insights and Perspectives
- (2016) Daniel B. Müller et al. Annual Review of Genetics
- Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens
- (2016) Panagiotis F. Sarris et al. BMC BIOLOGY
- Coevolutionary feedback elevates constitutive immune defence: a protein network model
- (2016) Tsukushi Kamiya et al. BMC EVOLUTIONARY BIOLOGY
- Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
- (2016) Tobias Großkopf et al. BMC EVOLUTIONARY BIOLOGY
- Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
- (2016) Kentaro Yoshida et al. BMC GENOMICS
- Multi-omics analysis of niche specificity provides new insights into ecological adaptation in bacteria
- (2016) Bo Zhu et al. ISME Journal
- Horizontal Gene Transfer from Bacteria Has Enabled the Plant-Parasitic NematodeGlobodera pallidato Feed on Host-Derived Sucrose
- (2016) Etienne G.J. Danchin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gram-negative phytopathogenic bacteria, all hemibiotrophs after all?
- (2016) Yvan Kraepiel et al. MOLECULAR PLANT PATHOLOGY
- How do plants read their own shapes?
- (2016) Olivier Hamant et al. NEW PHYTOLOGIST
- Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread
- (2016) Thomas Kroj et al. NEW PHYTOLOGIST
- A genome-scale metabolic network reconstruction of tomato (Solanum lycopersicumL.) and its application to photorespiratory metabolism
- (2016) Huili Yuan et al. PLANT JOURNAL
- The plant immunity inducer pipecolic acid accumulates in the xylem sap and leaves of soybean seedlings following Fusarium virguliforme infection
- (2016) Nilwala S. Abeysekara et al. PLANT SCIENCE
- Chromosome-level assembly ofArabidopsis thalianaLerreveals the extent of translocation and inversion polymorphisms
- (2016) Luis Zapata et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell division plane orientation based on tensile stress inArabidopsis thaliana
- (2016) Marion Louveaux et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Force-Driven Polymerization and Turgor-Induced Wall Expansion
- (2016) Olivier Ali et al. TRENDS IN PLANT SCIENCE
- Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
- (2016) Stéphane Hacquard et al. Nature Communications
- Rewiring of jasmonate and phytochrome B signalling uncouples plant growth-defense tradeoffs
- (2016) Marcelo L. Campos et al. Nature Communications
- Horizontal gene transfer drives adaptive colonization of apple trees by the fungal pathogen Valsa mali
- (2016) Zhiyuan Yin et al. Scientific Reports
- Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
- (2016) Matthew T. Agler et al. PLOS BIOLOGY
- A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum
- (2016) Rémi Peyraud et al. PLoS Pathogens
- Cooperation and Conflict in the Plant Immune System
- (2016) Eunyoung Chae et al. PLoS Pathogens
- Metabolic Reconstruction of Setaria italica: A Systems Biology Approach for Integrating Tissue-Specific Omics and Pathway Analysis of Bioenergy Grasses
- (2016) Cristiana G. de Oliveira Dal'Molin et al. Frontiers in Plant Science
- Emerging Trends in Molecular Interactions between Plants and the Broad Host Range Fungal Pathogens Botrytis cinerea and Sclerotinia sclerotiorum
- (2016) Malick Mbengue et al. Frontiers in Plant Science
- Priming for Enhanced Defense
- (2015) Uwe Conrath et al. Annual Review of Phytopathology
- Range-Expanding Pests and Pathogens in a Warming World
- (2015) Daniel Patrick Bebber Annual Review of Phytopathology
- Understanding Plant Immunity as a Surveillance System to Detect Invasion
- (2015) David E. Cook et al. Annual Review of Phytopathology
- A Receptor Pair with an Integrated Decoy Converts Pathogen Disabling of Transcription Factors to Immunity
- (2015) Clémentine Le Roux et al. CELL
- The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants
- (2015) Guoxun Wang et al. Cell Host & Microbe
- Crop-destroying fungal and oomycete pathogens challenge food security
- (2015) Daniel P. Bebber et al. FUNGAL GENETICS AND BIOLOGY
- Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves
- (2015) Florian Ryffel et al. ISME Journal
- The quantitative and condition-dependent Escherichia coli proteome
- (2015) Alexander Schmidt et al. NATURE BIOTECHNOLOGY
- Quantitative and logic modelling of molecular and gene networks
- (2015) Nicolas Le Novère NATURE REVIEWS GENETICS
- A functional perspective on phenotypic heterogeneity in microorganisms
- (2015) Martin Ackermann NATURE REVIEWS MICROBIOLOGY
- Multidimensional proteomics for cell biology
- (2015) Mark Larance et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection withPseudomonas syringaepv tomato DC3000
- (2015) Laura A. Lewis et al. PLANT CELL
- An untargeted global metabolomic analysis reveals the biochemical changes underlying basal resistance and priming in Solanum lycopersicum, and identifies 1-methyltryptophan as a metabolite involved in plant responses to Botrytis cinerea and Pseudomonas sy
- (2015) Gemma Camañes et al. PLANT JOURNAL
- Comprehensive proteomic analysis of the wheat pathogenic fungusZymoseptoria tritici
- (2015) Fen Yang et al. PROTEOMICS
- Trade-off between growth and immunity: role of brassinosteroids
- (2015) Rosa Lozano-Durán et al. TRENDS IN PLANT SCIENCE
- Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome
- (2015) Luigi Faino et al. mBio
- Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes
- (2015) John Beaulaurier et al. Nature Communications
- Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
- (2015) Zhong Wei et al. Nature Communications
- Thirteen challenges in modelling plant diseases
- (2015) Nik J. Cunniffe et al. Epidemics
- Peptidoglycan Perception in Plants
- (2015) Andrea A. Gust PLoS Pathogens
- Molecular phenotyping of plant single cell-types enhances forward genetic analyses
- (2015) John Schiefelbein Frontiers in Plant Science
- Mechanosensitive control of plant growth: bearing the load, sensing, transducing, and responding
- (2015) Bruno Moulia et al. Frontiers in Plant Science
- Thermodynamical journey in plant biology
- (2015) Adelin Barbacci et al. Frontiers in Plant Science
- Physical Models of Plant Development
- (2014) Olivier Ali et al. Annual Review of Cell and Developmental Biology
- Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life
- (2014) Ralf Weßling et al. Cell Host & Microbe
- Laser Assisted Microdissection, an Efficient Technique to Understand Tissue Specific Gene Expression Patterns and Functional Genomics in Plants
- (2014) Vibhav Gautam et al. MOLECULAR BIOTECHNOLOGY
- Plant PRRs and the Activation of Innate Immune Signaling
- (2014) Alberto P. Macho et al. MOLECULAR CELL
- Resistance to phytopathogense tutti quanti: placing plant quantitative disease resistance on the map
- (2014) Fabrice Roux et al. MOLECULAR PLANT PATHOLOGY
- The zigzag model of plant-microbe interactions: is it time to move on?
- (2014) Leighton Pritchard et al. MOLECULAR PLANT PATHOLOGY
- Constraint-based models predict metabolic and associated cellular functions
- (2014) Aarash Bordbar et al. NATURE REVIEWS GENETICS
- BRENDA in 2015: exciting developments in its 25th year of existence
- (2014) Antje Chang et al. NUCLEIC ACIDS RESEARCH
- STRING v10: protein–protein interaction networks, integrated over the tree of life
- (2014) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Multiscale digitalArabidopsispredicts individual organ and whole-organism growth
- (2014) Yin Hoon Chew et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effector Specialization in a Lineage of the Irish Potato Famine Pathogen
- (2014) S. Dong et al. SCIENCE
- Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus
- (2014) Kui Lin et al. PLoS Genetics
- Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid
- (2014) Shuta Asai et al. PLoS Pathogens
- The role of the secondary cell wall in plant resistance to pathogens
- (2014) Eva Miedes et al. Frontiers in Plant Science
- A novel conserved mechanism for plant NLR protein pairs: the “integrated decoy†hypothesis
- (2014) Stella Cesari et al. Frontiers in Plant Science
- Evaluating plant immunity using mass spectrometry-based metabolomics workflows
- (2014) Adam L. Heuberger et al. Frontiers in Plant Science
- Evolutionary systems biology: What it is and why it matters
- (2013) Orkun S. Soyer et al. BIOESSAYS
- Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex
- (2013) Nemo Peeters et al. BMC GENOMICS
- SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
- (2013) Claudine Chaouiya et al. BMC Systems Biology
- Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100
- (2013) Sarah Schatschneider et al. JOURNAL OF BIOTECHNOLOGY
- The cellular mechanics of an invasive lifestyle
- (2013) Amir Sanati Nezhad et al. JOURNAL OF EXPERIMENTAL BOTANY
- Responses to Light Intensity in a Genome-Scale Model of Rice Metabolism
- (2013) M. G. Poolman et al. PLANT PHYSIOLOGY
- Another Brick in the Cell Wall: Biosynthesis Dependent Growth Model
- (2013) Adelin Barbacci et al. PLoS One
- An Atypical Kinase under Balancing Selection Confers Broad-Spectrum Disease Resistance in Arabidopsis
- (2013) Carine Huard-Chauveau et al. PLoS Genetics
- Novel plant inputs influencing Ralstonia solanacearum during infection
- (2013) A. Paola Zuluaga et al. Frontiers in Microbiology
- Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs
- (2013) Nicolas Denancé et al. Frontiers in Plant Science
- Structure and evolution of barley powdery mildew effector candidates
- (2012) Carsten Pedersen et al. BMC GENOMICS
- Top 10 plant pathogenic bacteria in molecular plant pathology
- (2012) JOHN MANSFIELD et al. MOLECULAR PLANT PATHOLOGY
- Emerging fungal threats to animal, plant and ecosystem health
- (2012) Matthew C. Fisher et al. NATURE
- Next-generation proteomics: towards an integrative view of proteome dynamics
- (2012) A. F. Maarten Altelaar et al. NATURE REVIEWS GENETICS
- Integrated Systems View on Networking by Hormones in Arabidopsis Immunity Reveals Multiple Crosstalk for Cytokinin
- (2012) M. Naseem et al. PLANT CELL
- Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis
- (2012) O. Windram et al. PLANT CELL
- Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction
- (2012) Yoshihiro Kawahara et al. PLoS One
- Chitin-Induced Dimerization Activates a Plant Immune Receptor
- (2012) T. Liu et al. SCIENCE
- The Role of Auxin-Cytokinin Antagonism in Plant-Pathogen Interactions
- (2012) Muhammad Naseem et al. PLoS Pathogens
- An in silico compartmentalized metabolic model of Brassica napus enables the systemic study of regulatory aspects of plant central metabolism
- (2011) Eleftherios Pilalis et al. BIOTECHNOLOGY AND BIOENGINEERING
- Programmed cell death in the plant immune system
- (2011) N S Coll et al. CELL DEATH AND DIFFERENTIATION
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2011) R. Caspi et al. NUCLEIC ACIDS RESEARCH
- Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism
- (2011) Rajib Saha et al. PLoS One
- Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface
- (2011) T. O. Bozkurt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
- (2011) T. A. Richards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae
- (2011) S. Cunnac et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for Network Evolution in an Arabidopsis Interactome Map
- (2011) et al. SCIENCE
- Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network
- (2011) M. S. Mukhtar et al. SCIENCE
- How to infer gene networks from expression profiles, revisited
- (2011) C. A. Penfold et al. Interface Focus
- Quantifying Green Life: Grand Challenges in Plant Biophysics and Modeling
- (2011) Maciej A. Zwieniecki et al. Frontiers in Plant Science
- Towards a genome-scale kinetic model of cellular metabolism
- (2010) Kieran Smallbone et al. BMC Systems Biology
- Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
- (2010) Aarash Bordbar et al. Molecular Systems Biology
- Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
- (2010) Marco Todesco et al. NATURE
- Sugar transporters for intercellular exchange and nutrition of pathogens
- (2010) Li-Qing Chen et al. NATURE
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- Plant immunity: towards an integrated view of plant–pathogen interactions
- (2010) Peter N. Dodds et al. NATURE REVIEWS GENETICS
- The quick and the deadly: growth vs virulence in a seed bank pathogen
- (2010) Susan E. Meyer et al. NEW PHYTOLOGIST
- AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis
- (2010) C. G. de Oliveira Dal'Molin et al. PLANT PHYSIOLOGY
- C4GEM, a Genome-Scale Metabolic Model to Study C4 Plant Metabolism
- (2010) C. G. de Oliveira Dal'Molin et al. PLANT PHYSIOLOGY
- An Effector-Targeted Protease Contributes to Defense against Phytophthora infestans and Is under Diversifying Selection in Natural Hosts
- (2010) F. Kaschani et al. PLANT PHYSIOLOGY
- A systems biology perspective on plant–microbe interactions: Biochemical and structural targets of pathogen effectors
- (2010) Leighton Pritchard et al. PLANT SCIENCE
- Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison
- (2010) J. Schirawski et al. SCIENCE
- Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling
- (2010) Masanao Sato et al. PLoS Pathogens
- The power and control of gravitropic movements in plants: a biomechanical and systems biology view
- (2009) Bruno Moulia et al. JOURNAL OF EXPERIMENTAL BOTANY
- Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
- (2009) Brian J. Haas et al. NATURE
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Dual Roles of Reactive Oxygen Species and NADPH Oxidase RBOHD in an Arabidopsis-Alternaria Pathosystem
- (2009) M. Pogany et al. PLANT PHYSIOLOGY
- A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties
- (2009) M. G. Poolman et al. PLANT PHYSIOLOGY
- Loss of Function of a Proline-Containing Protein Confers Durable Disease Resistance in Rice
- (2009) S. Fukuoka et al. SCIENCE
- A Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust
- (2009) D. Fu et al. SCIENCE
- A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat
- (2009) S. G. Krattinger et al. SCIENCE
- Network Properties of Robust Immunity in Plants
- (2009) Kenichi Tsuda et al. PLoS Genetics
- Plant cell types: reporting and sampling with new technologies
- (2008) Timothy Nelson et al. CURRENT OPINION IN PLANT BIOLOGY
- News from the frontline: recent insights into PAMP-triggered immunity in plants
- (2008) Benjamin Schwessinger et al. CURRENT OPINION IN PLANT BIOLOGY
- Parasites lead to evolution of robustness against gene loss in host signaling networks
- (2008) Marcel Salathé et al. Molecular Systems Biology
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- A MYB Transcription Factor Regulates Very-Long-Chain Fatty Acid Biosynthesis for Activation of the Hypersensitive Cell Death Response in Arabidopsis
- (2008) S. Raffaele et al. PLANT CELL
- From Guard to Decoy: A New Model for Perception of Plant Pathogen Effectors
- (2008) R. A.L. van der Hoorn et al. PLANT CELL
- Flux Balance Analysis of Barley Seeds: A Computational Approach to Study Systemic Properties of Central Metabolism
- (2008) E. Grafahrend-Belau et al. PLANT PHYSIOLOGY
- Developmental Patterning by Mechanical Signals in Arabidopsis
- (2008) O. Hamant et al. SCIENCE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
- Shades of gray: the world of quantitative disease resistance
- (2008) Jesse A. Poland et al. TRENDS IN PLANT SCIENCE
- Insights on the mechanics of hyphal growth
- (2008) Nicholas P. Money Fungal Biology Reviews
- Mathematical modeling of hyphal tip growth
- (2008) Alain Goriely et al. Fungal Biology Reviews
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started