N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

(2017) Patrick Willems et al.   MOLECULAR & CELLULAR PROTEOMICS

Real-time detection of N-end rule-mediated ubiquitination via fluorescently labeled substrate probes

(2017) Augustin C. Mot et al.   NEW PHYTOLOGIST

Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development

(2017) Lei Li et al.   PLANT CELL

Serpin1 and WSCP differentially regulate the activity of the cysteine protease RD21 during plant development inArabidopsis thaliana

(2017) Sachin Rustgi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes

(2017) Shun-Jia Chen et al.   SCIENCE

Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets

(2017) Mark D. White et al.   Nature Communications

Light-Mediated Hormonal Regulation of Plant Growth and Development

(2016) Mieke de Wit et al.   Annual Review of Plant Biology

Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot

(2016) Antoine Gravot et al.   BMC PLANT BIOLOGY

Inhibition of cathepsin B by caspase-3 inhibitors blocks programmed cell death in Arabidopsis

(2016) Y Ge et al.   CELL DEATH AND DIFFERENTIATION

From start to finish: amino-terminal protein modifications as degradation signals in plants

(2016) Daniel J. Gibbs et al.   NEW PHYTOLOGIST

The N-end rule pathway regulates pathogen responses in plants

(2016) Rémi de Marchi et al.   Scientific Reports

TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors

(2016) Anna Prudova et al.   Cell Reports

Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana

(2016) Urszula Piskurewicz et al.   eLife

Oxygen Sensing Coordinates Photomorphogenesis to Facilitate Seedling Survival

(2015) Mohamad Abbas et al.   CURRENT BIOLOGY

Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss

(2015) Christian Schuessele et al.   NEW PHYTOLOGIST

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6

(2015) Guillermina M. Mendiondo et al.   PLANT BIOTECHNOLOGY JOURNAL

The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genesRAP2.12,RAP2.2andRAP2.3

(2015) Csaba Papdi et al.   PLANT JOURNAL

TheGreening after Extended Darkness1Is an N-End Rule Pathway Mutant with High Tolerance to Submergence and Starvation

(2015) Willi Riber et al.   PLANT PHYSIOLOGY

Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants

(2015) Daniel J. Gibbs et al.   PLANT PHYSIOLOGY

Subfamily-Specific Fluorescent Probes for Cysteine Proteases Display Dynamic Protease Activities during Seed Germination

(2015) Haibin Lu et al.   PLANT PHYSIOLOGY

Water-soluble chlorophyll protein is involved in herbivore resistance activation during greening ofArabidopsis thaliana

(2015) Edouard Boex-Fontvieille et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots

(2015) Hongtao Zhang et al.   PROTEOMICS

An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events inArabidopsis thaliana

(2015) A. Saskia Venne et al.   PROTEOMICS

The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signalling

(2015) Theo Klein et al.   Nature Communications

Downregulation of N-terminal acetylation triggers ABA-mediated drought responses in Arabidopsis

(2015) Eric Linster et al.   Nature Communications

Gene Expression Regulation in Photomorphogenesis from the Perspective of the Central Dogma

(2014) Shu-Hsing Wu   Annual Review of Plant Biology

The AtCathB3 gene, encoding a cathepsin B-like protease, is expressed during germination of Arabidopsis thaliana and transcriptionally repressed by the basic leucine zipper protein GBF1

(2014) Raquel Iglesias-Fernández et al.   JOURNAL OF EXPERIMENTAL BOTANY

Annotating N Termini for the Human Proteome Project: N Termini and Nα-Acetylation Status Differentiate Stable Cleaved Protein Species from Degradation Remnants in the Human Erythrocyte Proteome

(2014) Philipp F. Lange et al.   JOURNAL OF PROTEOME RESEARCH

Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors

(2014) Daniel J. Gibbs et al.   MOLECULAR CELL

N-terminomics and proteogenomics, getting off to a good start

(2014) Erica M. Hartmann et al.   PROTEOMICS

The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions

(2014) Daniel J. Gibbs et al.   TRENDS IN CELL BIOLOGY

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway

(2014) Daan A. Weits et al.   Nature Communications

Methionine salvage andS-adenosylmethionine: essential links between sulfur, ethylene and polyamine biosynthesis

(2013) Margret Sauter et al.   BIOCHEMICAL JOURNAL

Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover duringArabidopsisSeed Germination

(2013) Marc Galland et al.   MOLECULAR & CELLULAR PROTEOMICS

The Arabidopsis METACASPASE9 Degradome

(2013) L. Tsiatsiani et al.   PLANT CELL

Set-point control of RD21 protease activity by AtSerpin1 controls cell death in Arabidopsis

(2013) Nardy Lampl et al.   PLANT JOURNAL

The Arabidopsis RING E3 Ubiquitin Ligase AtAIRP3/LOG2 Participates in Positive Regulation of High-Salt and Drought Stress Responses

(2013) J. H. Kim et al.   PLANT PHYSIOLOGY

Seed storage oil catabolism: a story of give and take

(2012) Frederica L Theodoulou et al.   CURRENT OPINION IN PLANT BIOLOGY

New Role for an Old Rule: N-end Rule-Mediated Degradation of Ethylene Responsive Factor Proteins Governs Low Oxygen Response in PlantsF

(2012) Francesco Licausi et al.   Journal of Integrative Plant Biology

Comparative Large Scale Characterization of PlantversusMammal Proteins Reveals Similar and IdiosyncraticN-α-Acetylation Features

(2012) Willy V. Bienvenut et al.   MOLECULAR & CELLULAR PROTEOMICS

N-terminal Protein Processing: A Comparative Proteogenomic Analysis

(2012) Stefano Bonissone et al.   MOLECULAR & CELLULAR PROTEOMICS

Subclassification and Biochemical Analysis of Plant Papain-Like Cysteine Proteases Displays Subfamily-Specific Characteristics

(2012) K. H. Richau et al.   PLANT PHYSIOLOGY

A Role in Immunity for Arabidopsis Cysteine Protease RD21, the Ortholog of the Tomato Immune Protease C14

(2012) Takayuki Shindo et al.   PLoS One

Post-Translational Regulation and Trafficking of the Granulin-Containing Protease RD21 of Arabidopsis thaliana

(2012) Christian Gu et al.   PLoS One

Enhanced identification of peptides lacking basic residues by LC-ESI-MS/MS analysis of singly charged peptides

(2012) Martin L. Biniossek et al.   PROTEOMICS

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

(2011) Francesco Licausi et al.   NATURE

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates

(2011) Oded Kleifeld et al.   Nature Protocols

N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification

(2011) Pitter F. Huesgen et al.   PHYSIOLOGIA PLANTARUM

Natural substrates of plant proteases: how can protease degradomics extend our knowledge?

(2011) Liana Tsiatsiani et al.   PHYSIOLOGIA PLANTARUM

The N-end rule pathway and regulation by proteolysis

(2011) Alexander Varshavsky   PROTEIN SCIENCE

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

(2010) Oded Kleifeld et al.   NATURE BIOTECHNOLOGY

N-Terminal Acetylation of Cellular Proteins Creates Specific Degradation Signals

(2010) C.-S. Hwang et al.   SCIENCE

Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence

(2009) Hazel McLellan et al.   NEW PHYTOLOGIST

Regulation of seed germination and seedling growth by an Arabidopsis phytocystatin isoform, AtCYS6

(2009) Jung Eun Hwang et al.   PLANT CELL REPORTS

Structure and evolutionary conservation of the plant N-end rule pathway

(2009) Emmanuelle Graciet et al.   PLANT JOURNAL

The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis

(2009) T. J. Holman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development

(2009) E. Graciet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Proteases: From Phenotypes to Molecular Mechanisms

(2008) Renier A. L. van der Hoorn   Annual Review of Plant Biology

An Arabidopsis mutant able to green after extended dark periods shows decreased transcripts of seed protein genes and altered sensitivity to abscisic acid

(2008) Mun-Kit Choy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination

(2008) Michael J. Holdsworth et al.   NEW PHYTOLOGIST

Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using ‘click chemistry’

(2008) Farnusch Kaschani et al.   PLANT JOURNAL