Natural substrates of plant proteases: how can protease degradomics extend our knowledge?

Programmed cell death in the plant immune system

(2011) N S Coll et al.   CELL DEATH AND DIFFERENTIATION

Genetic suppression analysis in novel vacuolar processing enzymes reveals their roles in controlling sugar accumulation in tomato fruits

(2011) Tohru Ariizumi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fitness analyses ofArabidopsis thalianamutants depleted of FtsH metalloproteases and characterization of three FtsH6 deletion mutants exposed to high light stress, senescence and chilling

(2011) Raik Wagner et al.   NEW PHYTOLOGIST

Involvement of Deg5 protease in wounding-related disposal of PsbF apoprotein

(2011) Robert Luciński et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Recent advances in understanding the assembly and repair of photosystem II

(2010) Peter J. Nixon et al.   ANNALS OF BOTANY

ATP-dependent proteases in biogenesis and maintenance of plant mitochondria

(2010) Hanna Janska et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The Clp protease system; a central component of the chloroplast protease network

(2010) Paul Dominic B. Olinares et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Who gets cut during cell death?

(2010) Francis Impens et al.   CURRENT OPINION IN CELL BIOLOGY

Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity

(2010) Nina V Chichkova et al.   EMBO JOURNAL

Proteomic profiling of proteases: tools for granzyme degradomics

(2010) Robert van Domselaar et al.   Expert Review of Proteomics

ArabidopsisAtSerpin1, Crystal Structure andin VivoInteraction with Its Target Protease RESPONSIVE TO DESICCATION-21 (RD21)

(2010) Nardy Lampl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The role of vacuolar processing enzyme (VPE) from Nicotiana benthamiana in the elicitor-triggered hypersensitive response and stomatal closure

(2010) Huajian Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Probing the Efficiency of Proteolytic Events by Positional Proteomics

(2010) Kim Plasman et al.   MOLECULAR & CELLULAR PROTEOMICS

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

(2010) Oded Kleifeld et al.   NATURE BIOTECHNOLOGY

Complementary positional proteomics for screening substrates of endo- and exoproteases

(2010) Petra Van Damme et al.   NATURE METHODS

The thylakoid protease Deg1 is involved in photosystem-II assembly in Arabidopsis thaliana

(2010) Xuwu Sun et al.   PLANT JOURNAL

Characterization of a legumain/vacuolar processing enzyme and YVADase activity in Papaver pollen

(2010) Maurice Bosch et al.   PLANT MOLECULAR BIOLOGY

The Stromal Chloroplast Deg7 Protease Participates in the Repair of Photosystem II after Photoinhibition in Arabidopsis

(2010) X. Sun et al.   PLANT PHYSIOLOGY

Distinct roles for Arabidopsis SUMO protease ESD4 and its closest homolog ELS1

(2010) Rebecca Hermkes et al.   PLANTA

MS-driven protease substrate degradomics

(2010) Francis Impens et al.   PROTEOMICS

Proteasomal recognition of ubiquitylated substrates

(2010) Hongyong Fu et al.   TRENDS IN PLANT SCIENCE

Methods for the proteomic identification of protease substrates

(2009) Nicholas J Agard et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Suborganellar localization of plastidic type I signal peptidase 1 depends on chloroplast development

(2009) Rebecca L. Shipman et al.   FEBS LETTERS

Protein Quality Control in Chloroplasts: A Current Model of D1 Protein Degradation in the Photosystem II Repair Cycle

(2009) Y. Kato et al.   JOURNAL OF BIOCHEMISTRY

Large Scale Comparative Proteomics of a Chloroplast Clp Protease Mutant Reveals Folding Stress, Altered Protein Homeostasis, and Feedback Regulation of Metabolism

(2009) Boris Zybailov et al.   MOLECULAR & CELLULAR PROTEOMICS

Tudor staphylococcal nuclease is an evolutionarily conserved component of the programmed cell death degradome

(2009) Jens F. Sundström et al.   NATURE CELL BIOLOGY

MEROPS: the peptidase database

(2009) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

The N-terminal pro region mediates retention of unprocessed type-I PME in the Golgi apparatus

(2009) Sebastian Wolf et al.   PLANT JOURNAL

Regulation and processing of a plant peptide hormone, AtRALF23, in Arabidopsis

(2009) Renu Srivastava et al.   PLANT JOURNAL

Refining the Definition of Plant Mitochondrial Presequences through Analysis of Sorting Signals, N-Terminal Modifications, and Cleavage Motifs

(2009) S. Huang et al.   PLANT PHYSIOLOGY

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

(2009) T. Arnesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deg/HtrA proteases as components of a network for photosystem II quality control in chloroplasts and cyanobacteria

(2009) Pitter F. Huesgen et al.   RESEARCH IN MICROBIOLOGY

Caspase substrates: easily caught in deep waters?

(2009) Dieter Demon et al.   TRENDS IN BIOTECHNOLOGY

KDEL-tailed cysteine endopeptidases involved in programmed cell death, intercalation of new cells, and dismantling of extensin scaffolds

(2008) M. Helm et al.   AMERICAN JOURNAL OF BOTANY

Plant Proteases: From Phenotypes to Molecular Mechanisms

(2008) Renier A. L. van der Hoorn   Annual Review of Plant Biology

Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role inArabidopsis

(2008) Tara M. Stanne et al.   BIOCHEMICAL JOURNAL

Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini

(2008) Sami Mahrus et al.   CELL

Global Mapping of the Topography and Magnitude of Proteolytic Events in Apoptosis

(2008) Melissa M. Dix et al.   CELL

Strong Cation Exchange-based Fractionation of Lys-N-generated Peptides Facilitates the Targeted Analysis of Post-translational Modifications

(2008) Nadia Taouatas et al.   MOLECULAR & CELLULAR PROTEOMICS

Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana

(2008) Stamatis Rigas et al.   NEW PHYTOLOGIST

Small Ubiquitin-Like Modifier Proteases OVERLY TOLERANT TO SALT1 and -2 Regulate Salt Stress Responses in Arabidopsis

(2008) L. Conti et al.   PLANT CELL

Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis

(2008) Renu Srivastava et al.   PLANT JOURNAL

The DEG15 Serine Protease Cleaves Peroxisomal Targeting Signal 2-Containing Proteins in Arabidopsis

(2008) H. Schuhmann et al.   PLANT PHYSIOLOGY

Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

(2008) Boris Zybailov et al.   PLoS One

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)

(2008) An Staes et al.   PROTEOMICS

Cysteine cathepsins: Cellular roadmap to different functions

(2007) Klaudia Brix et al.   BIOCHIMIE