Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences

Family-Level Sampling of Mitochondrial Genomes in Coleoptera: Compositional Heterogeneity and Phylogenetics

(2015) Martijn J. T. N. Timmermans et al.   Genome Biology and Evolution

In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA

(2015) Melissa T. R. Hawkins et al.   Molecular Ecology Resources

Impact of enrichment conditions on cross-species capture of fresh and degraded DNA

(2015) Johanna L. A. Paijmans et al.   Molecular Ecology Resources

Exon capture phylogenomics: efficacy across scales of divergence

(2015) Jason G. Bragg et al.   Molecular Ecology Resources

Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly

(2015) Yan-Jie Feng et al.   Molecular Ecology Resources

Explosive radiation or uninformative genes? Origin and early diversification of tachinid flies (Diptera: Tachinidae)

(2015) Isaac S. Winkler et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of world stag beetles (Coleoptera: Lucanidae) reveals a Gondwanan origin of Darwin’s stag beetle

(2015) Sang Il Kim et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

A phylogeny of Sericini with particular reference to Chinese species using mitochondrial and ribosomal DNA (Coleoptera: Scarabaeidae)

(2015) Wan-Gang Liu et al.   ORGANISMS DIVERSITY & EVOLUTION

Phylogeny and classification of Cucujoidea and the recognition of a new superfamily Coccinelloidea (Coleoptera: Cucujiformia)

(2015) JAMES A. ROBERTSON et al.   SYSTEMATIC ENTOMOLOGY

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

(2015) DUANE D. MCKENNA et al.   SYSTEMATIC ENTOMOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The utility of CAD in recovering Gondwanan vicariance events and the evolutionary history of Aciliini (Coleoptera: Dytiscidae)

(2014) Rasa Bukontaite et al.   BMC EVOLUTIONARY BIOLOGY

Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)

(2014) Conrad P.D.T. Gillett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Towards a phylogeny of the Tenebrionoidea (Coleoptera)

(2014) Nicole L. Gunter et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution of scarab beetles tracks the sequential rise of angiosperms and mammals

(2014) D. Ahrens et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Species delimitation in the ground beetle subgenusLiocosmius(Coleoptera: Carabidae:Bembidion), including standard and next-generation sequencing of museum specimens

(2014) David R. Maddison et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

(2013) Stephen L. Cameron   Annual Review of Entomology

A Versatile and Highly Efficient Toolkit Including 102 Nuclear Markers for Vertebrate Phylogenomics, Tested by Resolving the Higher Level Relationships of the Caudata

(2013) Xing Xing Shen et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the burying beetles (Coleoptera: Silphidae: Nicrophorinae)

(2013) Derek S. Sikes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny

(2013) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification

(2013) LADISLAV BOCAK et al.   SYSTEMATIC ENTOMOLOGY

Early Cretaceous angiosperms and beetle evolution

(2013) Bo Wang et al.   Frontiers in Plant Science

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

(2013) Christopher I Keeling et al.   GENOME BIOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of Bembidion and related ground beetles (Coleoptera: Carabidae: Trechinae: Bembidiini: Bembidiina)

(2012) David R. Maddison   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Development of Three Long Universal Nuclear Protein-Coding Locus Markers and Their Application to Osteichthyan Phylogenetics with Nested PCR

(2012) Xing-Xing Shen et al.   PLoS One

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Molecules, morphology and minute hooded beetles: a phylogenetic study with implications for the evolution and classification of Corylophidae (Coleoptera: Cucujoidea)

(2012) JAMES A. ROBERTSON et al.   SYSTEMATIC ENTOMOLOGY

Phylogeny of the Coleoptera Based on Morphological Characters of Adults and Larvae

(2011) John F. Lawrence et al.   ANNALES ZOOLOGICI

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

(2011) Michelle D. Trautwein et al.   Annual Review of Entomology

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

(2011) J. E. McCormack et al.   GENOME RESEARCH

Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles

(2011) X.-X. Shen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data

(2011) Ainsley E. Seago et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata

(2011) Jonathan J. Fong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Generic revision and phylogeny of Microweiseinae (Coleoptera: Coccinellidae)

(2011) HERMES E. ESCALONA et al.   SYSTEMATIC ENTOMOLOGY

Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera

(2010) Joan Pons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

(2010) HOJUN SONG et al.   SYSTEMATIC ENTOMOLOGY

The evolution of food preferences in Coccinellidae

(2009) José Adriano Giorgi et al.   BIOLOGICAL CONTROL

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

(2009) Brian M Wiegmann et al.   BMC BIOLOGY

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles

(2009) Phillip Q Spinks et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny of ladybirds (Coleoptera: Coccinellidae): Are the subfamilies monophyletic?

(2009) A. Magro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

(2009) Nathan C. Sheffield et al.   SYSTEMATIC BIOLOGY

A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles

(2008) N. C. Sheffield et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

(2008) Ted M. Townsend et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A protocol for large-scale rRNA sequence analysis: Towards a detailed phylogeny of Coleoptera

(2008) Toby Hunt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evaluating nuclear protein-coding genes for phylogenetic utility in beetles

(2008) Alexander L. Wild et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE