The Development of Three Long Universal Nuclear Protein-Coding Locus Markers and Their Application to Osteichthyan Phylogenetics with Nested PCR

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

PhyDesign: an online application for profiling phylogenetic informativeness

(2011) Francesc López-Giráldez et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling

(2011) Claudio Oliveira et al.   BMC EVOLUTIONARY BIOLOGY

Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles

(2011) X.-X. Shen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing Hypotheses about the Sister Group of the Passeriformes Using an Independent 30-Locus Data Set

(2011) N. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Modern Birds Revealed by Mitogenomics: Timing the Radiation and Origin of Major Orders

(2011) M. A. Pacheco et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata

(2011) Jonathan J. Fong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A multilocus timescale for the origin of extant amphibians

(2010) Diego San Mauro   MOLECULAR PHYLOGENETICS AND EVOLUTION

An Evaluation of Phylogenetic Informativeness Profiles and the Molecular Phylogeny of Diplazontinae (Hymenoptera, Ichneumonidae)

(2010) Seraina Klopfstein et al.   SYSTEMATIC BIOLOGY

Higher-level salamander relationships and divergence dates inferred from complete mitochondrial genomes

(2009) Peng Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data Sets

(2008) Arjun B. Prasad et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

(2008) Ted M. Townsend et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

(2008) Robert C. Thomson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogeny and biogeography of langurs and leaf monkeys of South Asia (Primates: Colobinae)

(2008) K. Praveen Karanth et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconstructing the phylogenetic relationships of the earth’s most diverse clade of freshwater fishes—order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome

(2008) Richard L. Mayden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

(2008) G. Aguileta et al.   SYSTEMATIC BIOLOGY