Introduction: microbial local adaptation: insights from natural populations, genomics and experimental evolution

Adaptation of the pathogen, Pseudomonas syringae , during experimental evolution on a native vs. alternative host plant

(2017) Sean Meaden et al.   MOLECULAR ECOLOGY

Genomic evolution of bacterial populations under coselection by antibiotics and phage

(2017) Johannes Cairns et al.   MOLECULAR ECOLOGY

Unusual evolutionary mechanisms to escape effector-triggered immunity in the fungal phytopathogen Leptosphaeria maculans

(2017) C. Plissonneau et al.   MOLECULAR ECOLOGY

Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates

(2017) H. Badouin et al.   MOLECULAR ECOLOGY

The escalatory Red Queen: Population extinction and replacement following arms race dynamics in poplar rust

(2017) Antoine Persoons et al.   MOLECULAR ECOLOGY

Soft selective sweeps in fungicide resistance evolution: recurrent mutations without fitness costs in grapevine downy mildew

(2017) Chloé E. L. Delmas et al.   MOLECULAR ECOLOGY

Dynamics of Escherichia coli type I-E CRISPR spacers over 42 000 years

(2017) Ekaterina Savitskaya et al.   MOLECULAR ECOLOGY

The emergence of performance trade-offs during local adaptation: insights from experimental evolution

(2017) Lisa M. Bono et al.   MOLECULAR ECOLOGY

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements

(2017) D. Richard et al.   MOLECULAR ECOLOGY

Plasmid and clonal interference during post horizontal gene transfer evolution

(2017) S. Bedhomme et al.   MOLECULAR ECOLOGY

Evolutionary rescue and local adaptation under different rates of temperature increase: a combined analysis of changes in phenotype expression and genotype frequency in Paramecium microcosms

(2017) Joshua Killeen et al.   MOLECULAR ECOLOGY

Fungal adaptation to contemporary fungicide applications: the case of Botrytis cinerea populations from Champagne vineyards (France)

(2017) A.-S. Walker et al.   MOLECULAR ECOLOGY

Genomic signatures of adaptation to wine biological ageing conditions in biofilm-forming flor yeasts

(2017) A. L. Coi et al.   MOLECULAR ECOLOGY

Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts

(2017) Dario I. Ojeda Alayon et al.   MOLECULAR ECOLOGY

Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites

(2017) Pedro Almeida et al.   MOLECULAR ECOLOGY

What was old is new again: thermal adaptation within clonal lineages during range expansion in a fungal pathogen

(2017) Cécile Robin et al.   MOLECULAR ECOLOGY

Characterizing human cytomegalovirus reinfection in congenitally infected infants: an evolutionary perspective

(2017) Cornelia Pokalyuk et al.   MOLECULAR ECOLOGY

Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut

(2016) Mathilde Lescat et al.   MOLECULAR ECOLOGY

Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African HIV/AIDS cohort

(2016) Mathieu Vanhove et al.   MOLECULAR ECOLOGY

Local adaptation of plant viruses: lessons from experimental evolution

(2016) Santiago F. Elena   MOLECULAR ECOLOGY

Comparative transcriptomics reveal host-specific nucleotide variation in entomophthoralean fungi

(2016) Henrik H. De Fine Licht et al.   MOLECULAR ECOLOGY

Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes

(2016) Sara Branco et al.   MOLECULAR ECOLOGY

Co-evolutionary dynamics between a defensive microbe and a pathogen driven by fluctuating selection

(2016) Suzanne A. Ford et al.   MOLECULAR ECOLOGY

Parasite genetic distance and local adaptation in co-evolving bacteria-bacteriophage populations

(2016) Pauline D. Scanlan et al.   MOLECULAR ECOLOGY

Modified niche optima and breadths explain the historical contingency of bacterial community responses to eutrophication in coastal sediments

(2016) S. Fodelianakis et al.   MOLECULAR ECOLOGY

The genetic basis of local adaptation for pathogenic fungi in agricultural ecosystems

(2016) Daniel Croll et al.   MOLECULAR ECOLOGY

Canine distemper virus in the Serengeti ecosystem: molecular adaptation to different carnivore species

(2016) Veljko M. Nikolin et al.   MOLECULAR ECOLOGY

Local adaptation at higher trophic levels: contrasting hyperparasite-pathogen infection dynamics in the field and laboratory

(2016) Steven R. Parratt et al.   MOLECULAR ECOLOGY

Host diversity limits the evolution of parasite local adaptation

(2016) Daniel Morley et al.   MOLECULAR ECOLOGY

Strong phylogeographic co-structure between the anther-smut fungus and its white campion host

(2016) Alice Feurtey et al.   NEW PHYTOLOGIST

The population biology of fungal invasions

(2015) P. Gladieux et al.   MOLECULAR ECOLOGY

Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophages

(2014) A. Betts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

(2013) Pierre Gladieux et al.   MOLECULAR ECOLOGY

Epidemiological and evolutionary consequences of life-history trade-offs in pathogens

(2013) A.-L. Laine et al.   PLANT PATHOLOGY

Experimental coevolution of species interactions

(2013) Michael A. Brockhurst et al.   TRENDS IN ECOLOGY & EVOLUTION

Variation in infectivity and aggressiveness in space and time in wild host-pathogen systems: causes and consequences

(2012) A. J. M. Tack et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Genetic structure and local adaptation of European wheat yellow rust populations: the role of temperature-specific adaptation

(2011) Mamadou Mboup et al.   Evolutionary Applications

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens

(2010) G. AGUILETA et al.   MOLECULAR ECOLOGY

Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

(2009) Gabriela Aguileta et al.   INFECTION GENETICS AND EVOLUTION

The Beagle in a bottle

(2009) Angus Buckling et al.   NATURE

Temperature-mediated patterns of local adaptation in a natural plant–pathogen metapopulation

(2008) Anna-Liisa Laine   ECOLOGY LETTERS