Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements

First Report of Xanthomonas citri pv. citri Pathotype A Causing Asiatic Citrus Canker in Martinique, France

(2016) D. Richard et al.   PLANT DISEASE

Whole-Genome Sequencing Identifies Emergence of a Quinolone Resistance Mutation in a Case of Stenotrophomonas maltophilia Bacteremia

(2015) Theodore R. Pak et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov.

(2015) Lindsay R. Triplett et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

(2015) Jonathan L. Gordon et al.   BMC GENOMICS

Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola

(2015) Xiang-Na Niu et al.   BMC MICROBIOLOGY

Bridgehead invasion of a monomorphic plant pathogenic bacterium:Xanthomonas citripv. citri, an emerging citrus pathogen in Mali and Burkina Faso

(2015) A. Leduc et al.   ENVIRONMENTAL MICROBIOLOGY

Morphological and genotypic features of Xanthomonas arboricola pv. juglandis populations from walnut groves in Romagna region, Italy

(2015) Davide Giovanardi et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Bacterial antimicrobial metal ion resistance

(2015) Jon L. Hobman et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Genetic characterization of strains named asXanthomonas axonopodispv.dieffenbachiaeleads to a taxonomic revision of theX. axonopodisspecies complex

(2015) E. C. Constantin et al.   PLANT PATHOLOGY

A TALE of Transposition: Tn 3 -Like Transposons Play a Major Role in the Spread of Pathogenicity Determinants of Xanthomonas citri and Other Xanthomonads

(2015) Rafael Marini Ferreira et al.   mBio

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation

(2015) Sophie Cesbron et al.   Frontiers in Plant Science

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

(2014) Joseph Nesme et al.   CURRENT BIOLOGY

pRMH760, a Precursor of A/C2 Plasmids Carrying blaCMY and blaNDM Genes

(2014) Christopher J. Harmer et al.   Microbial Drug Resistance

A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage

(2014) Olivier Pruvost et al.   PLoS One

Development of pVCR94ΔX from Vibrio cholerae, a prototype for studying multidrug resistant IncA/C conjugative plasmids

(2014) Nicolas Carraro et al.   Frontiers in Microbiology

Characterization of the IncA/C plasmid pSCEC2 from Escherichia coli of swine origin that harbours the multiresistance gene cfr

(2013) W.-J. Zhang et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The antibiotic resistance “mobilome”: searching for the link between environment and clinic

(2013) Julie A. Perry et al.   Frontiers in Microbiology

ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R

(2012) Andrei-Alin Popescu et al.   BIOINFORMATICS

Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling

(2012) Julien Pelé et al.   BMC BIOINFORMATICS

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods

(2012) Alexandre P Francisco et al.   BMC BIOINFORMATICS

Copper resistance genes from different xanthomonads and citrus epiphytic bacteria confer resistance to Xanthomonas citri subsp. citri

(2012) Franklin Behlau et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

(2012) Josephine Bryant et al.   Future Microbiology

Novel Conjugative Transferable Multiple Drug Resistance Plasmid pAQU1 from Photobacterium damselae subsp. damselae Isolated from Marine Aquaculture Environment

(2012) Lisa Nonaka et al.   MICROBES AND ENVIRONMENTS

Inferring the Evolutionary History of IncP-1 Plasmids Despite Incongruence among Backbone Gene Trees

(2012) Diya Sen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights from genomic comparisons of genetically monomorphic bacterial pathogens

(2012) M. Achtman   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence for Acquisition of Copper Resistance Genes from Different Sources in Citrus-Associated Xanthomonads

(2012) Franklin Behlau et al.   PHYTOPATHOLOGY

Cointegrate-resolution of toluene-catabolic transposon Tn4651: Determination of crossover site and the segment required for full resolution activity

(2012) Hirokazu Yano et al.   PLASMID

A Degenerate Primer MOB Typing (DPMT) Method to Classify Gamma-Proteobacterial Plasmids in Clinical and Environmental Settings

(2012) Andrés Alvarado et al.   PLoS One

Plasmid-mediated horizontal gene transfer is a coevolutionary process

(2012) Ellie Harrison et al.   TRENDS IN MICROBIOLOGY

Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture

(2012) Claudia Seiler et al.   Frontiers in Microbiology

Molecular Characterization of Copper Resistance Genes from Xanthomonas citri subsp.citriand Xanthomonas alfalfae subsp. citrumelonis

(2011) Franklin Behlau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intercellular Nanotubes Mediate Bacterial Communication

(2011) Gyanendra P. Dubey et al.   CELL

Trends and barriers to lateral gene transfer in prokaryotes

(2011) Ovidiu Popa et al.   CURRENT OPINION IN MICROBIOLOGY

Unstable green fluorescent protein for study of Xanthomonas citri subsp. citri survival on citrus

(2011) J. Cubero et al.   PLANT PATHOLOGY

Comparative Genomics of Multidrug Resistance-Encoding IncA/C Plasmids from Commensal and Pathogenic Escherichia coli from Multiple Animal Sources

(2011) Claudia Fernández-Alarcón et al.   PLoS One

The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination

(2011) Peter Norberg et al.   Nature Communications

The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity

(2011) Rongman Cai et al.   PLoS Pathogens

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Mobility of Plasmids

(2010) C. Smillie et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Origins and Evolution of Antibiotic Resistance

(2010) J. Davies et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Integrating conjugative elements of the SXT/R391 family trigger the excision and drive the mobilization of a new class of Vibrio genomic islands

(2010) Aurélie Daccord et al.   MOLECULAR MICROBIOLOGY

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

(2010) Rachel A. F. Wozniak et al.   NATURE REVIEWS MICROBIOLOGY

TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea

(2010) Yucheng Shao et al.   NUCLEIC ACIDS RESEARCH

Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042

(2010) Roy R. Chaudhuri et al.   PLoS One

Characterization of copper-resistant bacteria and assessment of bacterial communities in rhizosphere soils of copper-tolerant plants

(2009) Lin Yan He et al.   APPLIED SOIL ECOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Comparative Genomics of the IncA/C Multidrug Resistance Plasmid Family

(2009) W. F. Fricke et al.   JOURNAL OF BACTERIOLOGY

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens

(2008) Mark Achtman   Annual Review of Microbiology

Development of 14 minisatellite markers for the citrus canker bacterium,Xanthomonas citripv.citri

(2008) L. BUI THI NGOC et al.   Molecular Ecology Resources

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

(2008) Lisa C Crossman et al.   GENOME BIOLOGY