Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites
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Title
Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 26, Issue 7, Pages 2167-2182
Publisher
Wiley
Online
2017-02-24
DOI
10.1111/mec.14071
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- (2015) Pedro Almeida et al. MOLECULAR ECOLOGY
- Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
- (2015) Marina Marcet-Houben et al. PLOS BIOLOGY
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- (2015) Jennifer H. Wisecaver et al. Frontiers in Microbiology
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- (2014) Kevin Cheeseman et al. Nature Communications
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- (2012) B. Dunn et al. GENOME RESEARCH
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- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
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