Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates
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Title
Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 26, Issue 7, Pages 2041-2062
Publisher
Wiley
Online
2016-12-25
DOI
10.1111/mec.13976
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- (2016) Sara Branco et al. MOLECULAR ECOLOGY
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- (2015) D. Croll et al. GENETICS
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- (2015) Zhenchuan Ma et al. PLANT CELL
- Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae
- (2015) Hélène Badouin et al. GENETICS
- fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
- (2014) Anil Raj et al. GENETICS
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- (2014) Christian Rödelsperger et al. GENETICS
- Performance of a Hybrid Fungal Pathogen on Pure-Species and Hybrid Host Plants
- (2014) Amanda K. Gibson et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
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- (2013) Quan Long et al. NATURE GENETICS
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- SIBLING COMPETITION ARENA: SELFING AND A COMPETITION ARENA CAN COMBINE TO CONSTITUTE A BARRIER TO GENE FLOW IN SYMPATRY
- (2012) A. K. Gibson et al. EVOLUTION
- Extensive Divergence Between Mating-Type Chromosomes of the Anther-Smut Fungus
- (2012) M. E. Hood et al. GENETICS
- Limited Evidence for Classic Selective Sweeps in African Populations
- (2012) J. M. Granka et al. GENETICS
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- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
- (2012) Erik C Andersen et al. NATURE GENETICS
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- (2012) G. P. Morris et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2012) C.-J. Rubin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2012) Richard A. Festa et al. PLoS Pathogens
- BamTools: a C++ API and toolkit for analyzing and managing BAM files
- (2011) D. W. Barnett et al. BIOINFORMATICS
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- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
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- (2010) D. E. Neafsey et al. GENOME RESEARCH
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- (2010) P. Gladieux et al. MOLECULAR BIOLOGY AND EVOLUTION
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- Glacial Refugia in Pathogens: European Genetic Structure of Anther Smut Pathogens on Silene latifolia and Silene dioica
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- Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
- (2009) Laurent Duret et al. Annual Review of Genomics and Human Genetics
- Fungal Effector Proteins
- (2009) Ioannis Stergiopoulos et al. Annual Review of Phytopathology
- The Fungi
- (2009) Jason E. Stajich et al. CURRENT BIOLOGY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Silene as a model system in ecology and evolution
- (2009) G Bernasconi et al. HEREDITY
- Hybrid sterility and inviability in the parasitic fungal species complexMicrobotryum
- (2009) D. M. DE VIENNE et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Recent Strong Positive Selection on Drosophila melanogaster HDAC6, a Gene Encoding a Stress Surveillance Factor, as Revealed by Population Genomic Analysis
- (2009) N. Svetec et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population Genetics of Fungal and Oomycete Effectors Involved in Gene-for-Gene Interactions
- (2009) Eva H. Stukenbrock et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10
- (2009) F. Tian et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Selection at a Single Locus Leads to Widespread Expansion of Toxoplasma gondii Lineages That Are Virulent in Mice
- (2009) Asis Khan et al. PLoS Genetics
- Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
- (2009) Ryan N. Gutenkunst et al. PLoS Genetics
- adegenet: a R package for the multivariate analysis of genetic markers
- (2008) Thibaut Jombart BIOINFORMATICS
- Mating System of the Anther Smut FungusMicrobotryum violaceum: Selfing under Heterothallism
- (2008) Tatiana Giraud et al. EUKARYOTIC CELL
- PERMANENT GENETIC RESOURCES: Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum
- (2007) T. GIRAUD et al. Molecular Ecology Resources
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