Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
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Title
Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 27, Issue 1, Pages 99-111
Publisher
Wiley
Online
2017-11-24
DOI
10.1111/mec.14439
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Note: Only part of the references are listed.- Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes
- (2017) Fritjof Lammers et al. Genome Biology and Evolution
- Evolution and Diversity of Transposable Elements in Vertebrate Genomes
- (2017) Cibele G. Sotero-Caio et al. Genome Biology and Evolution
- The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
- (2017) Eugene J. Gardner et al. GENOME RESEARCH
- Genomic analysis reveals major determinants ofcis-regulatory variation inCapsella grandiflora
- (2017) Kim A. Steige et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamics of genome size evolution in birds and mammals
- (2017) Aurélie Kapusta et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome
- (2017) Jinmin Lee et al. Mobile DNA
- Evolution of bird genomes-a transposon's-eye view
- (2016) Aurélie Kapusta et al. Annals of the New York Academy of Sciences
- Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles
- (2016) Marta Farré et al. Genome Biology and Evolution
- Direct estimate of the rate of germline mutation in a bird
- (2016) Linnéa Smeds et al. GENOME RESEARCH
- PSMC analysis of effective population sizes in molecular ecology and its application to black-and-whiteFicedulaflycatchers
- (2016) Krystyna Nadachowska-Brzyska et al. MOLECULAR ECOLOGY
- Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis ) genome
- (2016) Ludovic Dutoit et al. Molecular Ecology Resources
- The industrial melanism mutation in British peppered moths is a transposable element
- (2016) Arjen E. van’t Hof et al. NATURE
- Adaptation to Global Change: A Transposable Element–Epigenetics Perspective
- (2016) Olivier Rey et al. TRENDS IN ECOLOGY & EVOLUTION
- Tectonic collision and uplift of Wallacea triggered the global songbird radiation
- (2016) Robert G. Moyle et al. Nature Communications
- Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
- (2016) Nagarjun Vijay et al. Nature Communications
- High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree
- (2016) Linnéa Smeds et al. PLoS Genetics
- The Arabidopsis thaliana mobilome and its impact at the species level
- (2016) Leandro Quadrana et al. eLife
- Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
- (2016) Tim Stuart et al. eLife
- Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution
- (2015) Elizabeth Hénaff et al. BMC GENOMICS
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
- (2015) Fiorella C. Grandi et al. GENOME RESEARCH
- Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers
- (2015) Reto Burri et al. GENOME RESEARCH
- Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species
- (2015) Jessica Stapley et al. MOLECULAR ECOLOGY
- Phylogeny and biogeography of Ficedula flycatchers (Aves: Muscicapidae): Novel results from fresh source material
- (2015) Robert G. Moyle et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- An integrated map of structural variation in 2,504 human genomes
- (2015) Peter H. Sudmant et al. NATURE
- The genomic and phenotypic diversity of Schizosaccharomyces pombe
- (2015) Daniel C Jeffares et al. NATURE GENETICS
- What's in a genome? The C-value enigma and the evolution of eukaryotic genome content
- (2015) Tyler A. Elliott et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- MIR retrotransposon sequences provide insulators to the human genome
- (2015) Jianrong Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data
- (2015) Alexander Nater et al. SYSTEMATIC BIOLOGY
- Evolutionary analysis of the female-specific avian W chromosome
- (2015) Linnéa Smeds et al. Nature Communications
- The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
- (2015) Alexander Suh et al. PLOS BIOLOGY
- Transposable element polymorphisms recapitulate human evolution
- (2015) Lavanya Rishishwar et al. Mobile DNA
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Population Genomics of Transposable Elements inDrosophila
- (2014) Maite G. Barrón et al. Annual Review of Genetics
- Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes
- (2014) Alexander Suh et al. Genome Biology and Evolution
- Genomic Support for a Moa–Tinamou Clade and Adaptive Morphological Convergence in Flightless Ratites
- (2014) Allan J. Baker et al. MOLECULAR BIOLOGY AND EVOLUTION
- The transposable elementBari-Jhehmediates oxidative stress response in Drosophila
- (2014) Lain Guio et al. MOLECULAR ECOLOGY
- A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
- (2014) Takeshi Kawakami et al. MOLECULAR ECOLOGY
- Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel
- (2014) Y. B. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic 'engines' of flight drive genome size reduction in birds
- (2014) N. A. Wright et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Comparative genomics reveals insights into avian genome evolution and adaptation
- (2014) G. Zhang et al. SCIENCE
- A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
- (2014) Lidia Mateo et al. PLoS Genetics
- Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data
- (2013) Krystyna Nadachowska-Brzyska et al. PLoS Genetics
- Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera
- (2013) Christine A Lavoie et al. Mobile DNA
- RetroSeq: transposable element discovery from next-generation sequencing data
- (2012) Thomas M. Keane et al. BIOINFORMATICS
- Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
- (2012) Dominic Schmidt et al. CELL
- Active human retrotransposons: variation and disease
- (2012) Dustin C Hancks et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The Evolution of Intron Size in Amniotes: A Role for Powered Flight?
- (2012) Qu Zhang et al. Genome Biology and Evolution
- A Universal Method for the Study of CR1 Retroposons in Nonmodel Bird Genomes
- (2012) A. Suh et al. MOLECULAR BIOLOGY AND EVOLUTION
- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- The genomic landscape shaped by selection on transposable elements across 18 mouse strains
- (2012) Christoffer Nellåker et al. GENOME BIOLOGY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Molecular cytogenetic and genomic insights into chromosomal evolution
- (2011) A Ruiz-Herrera et al. HEREDITY
- Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds
- (2011) Alexander Suh et al. Nature Communications
- Genome Evolution in Reptilia, the Sister Group of Mammals
- (2010) Daniel E. Janes et al. Annual Review of Genomics and Human Genetics
- Transposable Elements in Reptilian and Avian (Sauropsida) Genomes
- (2010) D. Kordis CYTOGENETIC AND GENOME RESEARCH
- The genome of a songbird
- (2010) Wesley C. Warren et al. NATURE
- A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome
- (2010) Miriam K. Konkel et al. SEMINARS IN CANCER BIOLOGY
- Evolutionary stasis: the stable chromosomes of birds
- (2010) Hans Ellegren TRENDS IN ECOLOGY & EVOLUTION
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Population genomics of domestic and wild yeasts
- (2009) Gianni Liti et al. NATURE
- The smallest avian genomes are found in hummingbirds
- (2009) T. R. Gregory et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Recent developments in the MAFFT multiple sequence alignment program
- (2008) K. Katoh et al. BRIEFINGS IN BIOINFORMATICS
- A universal classification of eukaryotic transposable elements implemented in Repbase
- (2008) Vladimir V. Kapitonov et al. NATURE REVIEWS GENETICS
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
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