Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes

Genomic Support for a Moa–Tinamou Clade and Adaptive Morphological Convergence in Flightless Ratites

(2014) Allan J. Baker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes

(2014) Amanda Y Chong et al.   Retrovirology

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

(2014) R. E. Green et al.   SCIENCE

Whole-genome analyses resolve early branches in the tree of life of modern birds

(2014) E. D. Jarvis et al.   SCIENCE

Three Groups of Transposable Elements with Contrasting Copy Number Dynamics and Host Responses in the Maize (Zea mays ssp. mays) Genome

(2014) Concepcion M. Diez et al.   PLoS Genetics

Early Mesozoic Coexistence of Amniotes and Hepadnaviridae

(2014) Alexander Suh et al.   PLoS Genetics

Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator

(2013) Qiu-Hong Wan et al.   CELL RESEARCH

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan

(2013) Zhuo Wang et al.   NATURE GENETICS

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

(2013) T. A. Castoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

(2013) F. J. Vonk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crocodylian diversity peak and extinction in the late Cenozoic of the northern Neotropics

(2013) T. M. Scheyer et al.   Nature Communications

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

(2013) John A St John et al.   GENOME BIOLOGY

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

(2013) H Bradley Shaffer et al.   GENOME BIOLOGY

CR1 retroposons provide a new insight into the phylogeny of Phasianidae species (Aves: Galliformes)

(2012) Zhaofeng Liu et al.   GENE

A Universal Method for the Study of CR1 Retroposons in Nonmodel Bird Genomes

(2012) A. Suh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A New Eusuchian Crocodyliform with Novel Cranial Integument and Its Significance for the Origin and Evolution of Crocodylia

(2012) Casey M. Holliday et al.   PLoS One

Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds

(2012) O. Haddrath et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A TIME-CALIBRATED SPECIES TREE OF CROCODYLIA REVEALS A RECENT RADIATION OF THE TRUE CROCODILES

(2011) Jamie R. Oaks   EVOLUTION

Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia

(2011) P.R. Meganathan et al.   GENE

Retroposon Insertions and the Chronology of Avian Sex Chromosome Evolution

(2011) Alexander Suh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life

(2011) Kin-Lan Han et al.   SYSTEMATIC BIOLOGY

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

(2011) Alexander Suh et al.   Nature Communications

Genome Evolution in Reptilia, the Sister Group of Mammals

(2010) Daniel E. Janes et al.   Annual Review of Genomics and Human Genetics

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

(2010) Gennady Churakov et al.   BMC EVOLUTIONARY BIOLOGY

Transposable Elements in Reptilian and Avian (Sauropsida) Genomes

(2010) D. Kordis   CYTOGENETIC AND GENOME RESEARCH

PiggyBac-ing on a Primate Genome: Novel Elements, Recent Activity and Horizontal Transfer

(2010) Heidi J. T. Pagan et al.   Genome Biology and Evolution

Paleogenomic data suggest mammal-like genome size in the ancestral amniote and derived large genome size in amphibians

(2010) C. L. ORGAN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Calibration of Mutation Rates Reveals Diverse Subfamily Structure of Galliform CR1 Repeats

(2009) George E. Liu et al.   Genome Biology and Evolution

Mosaic retroposon insertion patterns in placental mammals

(2009) G. Churakov et al.   GENOME RESEARCH

The Evolutionary Dynamics of Autonomous Non-LTR Retrotransposons in the Lizard Anolis Carolinensis Shows More Similarity to Fish Than Mammals

(2009) P. A. Novick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

(2009) H. Nishihara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cretaceous Crocodyliforms from the Sahara

(2009) Paul Sereno et al.   ZooKeys

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

A complete skull ofAllodaposuchus precedensNopcsa, 1928 (Eusuchia) and a reassessment of the morphology of the taxon based on the Romanian remains

(2008) Massimo Delfino et al.   JOURNAL OF VERTEBRATE PALEONTOLOGY

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY