Epigenetic inheritance, prions and evolution

Prion-like domains as epigenetic regulators, scaffolds for subcellular organization, and drivers of neurodegenerative disease

(2016) Zachary M. March et al.   BRAIN RESEARCH

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

Nongenetic Inheritance of Induced Resistance in a Wild Annual Plant

(2016) Åsa Lankinen et al.   PHYTOPATHOLOGY

DNA methylation mediates genetic variation for adaptive transgenerational plasticity

(2016) Jacob J. Herman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary dynamics of phenotype-structured populations: from individual-level mechanisms to population-level consequences

(2016) Rebecca H. Chisholm et al.   ZEITSCHRIFT FUR ANGEWANDTE MATHEMATIK UND PHYSIK

Yeast and Fungal Prions

(2016) Reed B. Wickner   Cold Spring Harbor Perspectives in Biology

Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana

(2016) Maartje P. Groot et al.   PLoS One

Epigenetic mechanisms of postzygotic reproductive isolation in plants

(2015) Clément Lafon-Placette et al.   CURRENT OPINION IN PLANT BIOLOGY

Stress-induced structural changes in plant chromatin

(2015) Aline V Probst et al.   CURRENT OPINION IN PLANT BIOLOGY

Environmental Epigenetics and a Unified Theory of the Molecular Aspects of Evolution: A Neo-Lamarckian Concept that Facilitates Neo-Darwinian Evolution

(2015) M. K. Skinner   Genome Biology and Evolution

Epigenetic mutations can both help and hinder adaptive evolution

(2015) Ilkka Kronholm et al.   MOLECULAR ECOLOGY

Oxidative stress conditions increase the frequency ofde novoformation of the yeast [PSI+] prion

(2015) Victoria A. Doronina et al.   MOLECULAR MICROBIOLOGY

Trans-Homolog Interactions Facilitating Paramutation in Maize

(2015) Brian John Giacopelli et al.   PLANT PHYSIOLOGY

Structure-based view on [PSI+] prion properties

(2015) Stanislav A Bondarev et al.   Prion

When is incomplete epigenetic resetting in germ cells favoured by natural selection?

(2015) Tobias Uller et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Paramutation phenomena in non-vertebrate animals

(2015) Stéphane Ronsseray   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Paramutation in maize and related behaviors in metazoans

(2015) Janelle M. Gabriel et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Paramutation phenomena in plants

(2015) Roberto Pilu   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Yeast prions: Paramutation at the protein level?

(2015) Mick F. Tuite   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Cis-acting determinants of paramutation

(2015) Iris Hövel et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Nongenetic inheritance and transgenerational epigenetics

(2015) Moshe Szyf   TRENDS IN MOLECULAR MEDICINE

The Yeast Prion [SWI+] Abolishes Multicellular Growth by Triggering Conformational Changes of Multiple Regulators Required for Flocculin Gene Expression

(2015) Zhiqiang Du et al.   Cell Reports

From Here to Eternity—The Theory and Practice of a Really Long Experiment

(2015) Jeremy W. Fox et al.   PLOS BIOLOGY

Tertiary siRNAs Mediate Paramutation in C. elegans

(2015) Alexandra Sapetschnig et al.   PLoS Genetics

Disputing Lamarckian epigenetic inheritance in mammals

(2015) Emma Whitelaw   GENOME BIOLOGY

PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition

(2014) A. K. Lancaster et al.   BIOINFORMATICS

Cross-Kingdom Chemical Communication Drives a Heritable, Mutually Beneficial Prion-Based Transformation of Metabolism

(2014) Daniel F. Jarosz et al.   CELL

An Evolutionarily Conserved Prion-like Element Converts Wild Fungi from Metabolic Specialists to Generalists

(2014) Daniel F. Jarosz et al.   CELL

Paternal Diet Defines Offspring Chromatin State and Intergenerational Obesity

(2014) Anita Öst et al.   CELL

Transgenerational Epigenetic Inheritance: Myths and Mechanisms

(2014) Edith Heard et al.   CELL

Epigenetic memory in plants

(2014) M. Iwasaki et al.   EMBO JOURNAL

PHENOTYPIC PLASTICITY AND EPIGENETIC MARKING: AN ASSESSMENT OF EVIDENCE FOR GENETIC ACCOMMODATION

(2014) Carl D. Schlichting et al.   EVOLUTION

Sporadic Distribution of Prion-Forming Ability of Sup35p from Yeasts and Fungi

(2014) H. K. Edskes et al.   GENETICS

Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?

(2014) Elizabeth J. Duncan et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Distinct Amino Acid Compositional Requirements for Formation and Maintenance of the [PSI+] Prion in Yeast

(2014) Kyle S. MacLea et al.   MOLECULAR AND CELLULAR BIOLOGY

Potential roles of noncoding RNAs in environmental epigenetic transgenerational inheritance

(2014) Wei Yan   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Does evolutionary theory need a rethink?

(2014) Kevin Laland et al.   NATURE

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

The Secret Garden--Epigenetic Alleles Underlie Complex Traits

(2014) R. J. Schmitz   SCIENCE

In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism

(2014) E. J. Radford et al.   SCIENCE

Genome-wide Translational Changes Induced by the Prion [PSI+]

(2014) Agnès Baudin-Baillieu et al.   Cell Reports

Discovering putative prion sequences in complete proteomes using probabilistic representations of Q/N-rich domains

(2013) Vladimir Espinosa Angarica et al.   BMC GENOMICS

Heritable Remodeling of Yeast Multicellularity by an Environmentally Responsive Prion

(2013) Daniel L. Holmes et al.   CELL

NATURAL VARIATION IN EPIGENETIC GENE REGULATION AND ITS EFFECTS ON PLANT DEVELOPMENTAL TRAITS

(2013) Franziska Turck et al.   EVOLUTION

HOW STABLE ‘SHOULD’ EPIGENETIC MODIFICATIONS BE? INSIGHTS FROM ADAPTIVE PLASTICITY AND BET HEDGING

(2013) Jacob J. Herman et al.   EVOLUTION

GENETIC VARIATION AND THE EVOLUTION OF EPIGENETIC REGULATION

(2013) Robert E. Furrow et al.   EVOLUTION

Epigenetics in an ecotoxicological context

(2013) Michiel B. Vandegehuchte et al.   MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS

Transgenerational epigenetic inheritance: how important is it?

(2013) Ueli Grossniklaus et al.   NATURE REVIEWS GENETICS

Blessings in disguise: biological benefits of prion-like mechanisms

(2013) Gregory A. Newby et al.   TRENDS IN CELL BIOLOGY

Bridging the transgenerational gap with epigenetic memory

(2013) Jana P. Lim et al.   TRENDS IN GENETICS

Does the central dogma still stand?

(2012) Eugene V Koonin   Biology Direct

piRNAs Can Trigger a Multigenerational Epigenetic Memory in the Germline of C. elegans

(2012) Alyson Ashe et al.   CELL

Epigenetic Variations in Heredity and Evolution

(2012) E Jablonka   CLINICAL PHARMACOLOGY & THERAPEUTICS

Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

(2012) Stéphanie Durand et al.   CURRENT BIOLOGY

Paramutation: a trans-homolog interaction affecting heritable gene regulation

(2012) Jay B Hollick   CURRENT OPINION IN PLANT BIOLOGY

Prions in Yeast

(2012) S. W. Liebman et al.   GENETICS

Prions are a common mechanism for phenotypic inheritance in wild yeasts

(2012) Randal Halfmann et al.   NATURE

Chromatin replication and epigenome maintenance

(2012) Constance Alabert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

Modulation and elimination of yeast prions by protein chaperones and co-chaperones.

(2012) Michael Reidy et al.   Prion

The yeast prions [PSI+] and [URE3] are molecular degenerative diseases

(2012) Reed B. Wickner et al.   Prion

Epigenetic transgenerational inheritance of altered stress responses

(2012) D. Crews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic inheritance and plasticity: The responsive germline

(2012) Eva Jablonka   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

A Yeast Prion, Mod5, Promotes Acquired Drug Resistance and Cell Survival Under Environmental Stress

(2012) G. Suzuki et al.   SCIENCE

Transgenerational defense induction and epigenetic inheritance in plants

(2012) Liza M. Holeski et al.   TRENDS IN ECOLOGY & EVOLUTION

Epigenetic and epigenomic variation in Arabidopsis thaliana

(2012) Robert J. Schmitz et al.   TRENDS IN PLANT SCIENCE

Epialleles in plant evolution

(2012) Detlef Weigel et al.   GENOME BIOLOGY

Inheritance of Stress-Induced, ATF-2-Dependent Epigenetic Change

(2011) Ki-Hyeon Seong et al.   CELL

You Are What Your Dad Ate

(2011) Anne C. Ferguson-Smith et al.   Cell Metabolism

Selected aspects of transgenerational epigenetic inheritance and resetting in plants

(2011) Jerzy Paszkowski et al.   CURRENT OPINION IN PLANT BIOLOGY

Commentary: The epigenotype—a dynamic network view of development

(2011) Eva Jablonka et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Methionine Oxidation of Sup35 Protein Induces Formation of the [PSI+] Prion in a Yeast Peroxiredoxin Mutant

(2011) Theodora C. Sideri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Destabilization and Recovery of a Yeast Prion after Mild Heat Shock

(2011) Gary P. Newnam et al.   JOURNAL OF MOLECULAR BIOLOGY

Opposing Effects of Glutamine and Asparagine Govern Prion Formation by Intrinsically Disordered Proteins

(2011) Randal Halfmann et al.   MOLECULAR CELL

Prion Induction by the Short-Lived, Stress-Induced Protein Lsb2 Is Regulated by Ubiquitination and Association with the Actin Cytoskeleton

(2011) Tatiana A. Chernova et al.   MOLECULAR CELL

Beyond DNA: integrating inclusive inheritance into an extended theory of evolution

(2011) Étienne Danchin et al.   NATURE REVIEWS GENETICS

[PSI+] Maintenance Is Dependent on the Composition, Not Primary Sequence, of the Oligopeptide Repeat Domain

(2011) James A. Toombs et al.   PLoS One

Newly identified prions in budding yeast, and their possible functions

(2011) Emily T. Crow et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Stable inheritance of an acquired behavior in Caenorhabditis elegans

(2010) Jean-Jacques Remy   CURRENT BIOLOGY

Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility

(2010) Yoshiaki Tarutani et al.   NATURE

The prion hypothesis: from biological anomaly to basic regulatory mechanism

(2010) Mick F. Tuite et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Non-Mendelian determinant [ISP+] in yeast is a nuclear-residing prion form of the global transcriptional regulator Sfp1

(2010) T. Rogoza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics in the Extreme: Prions and the Inheritance of Environmentally Acquired Traits

(2010) Randal Halfmann et al.   SCIENCE

Prions, protein homeostasis, and phenotypic diversity

(2010) Randal Halfmann et al.   TRENDS IN CELL BIOLOGY

A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins

(2009) Simon Alberti et al.   CELL

THE EVOLUTION OF REVERSIBLE SWITCHES IN THE PRESENCE OF IRREVERSIBLE MIMICS

(2009) Alex K. Lancaster et al.   EVOLUTION

A heritable switch in carbon source utilization driven by an unusual yeast prion

(2009) J. C.S. Brown et al.   GENES & DEVELOPMENT

The Spontaneous Appearance Rate of the Yeast Prion [PSI+] and Its Implications for the Evolution of the Evolvability Properties of the [PSI+] System

(2009) A. K. Lancaster et al.   GENETICS

The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion

(2009) Basant K. Patel et al.   NATURE CELL BIOLOGY

Hsp104 and Prion Propagation

(2009) Nina Romanova et al.   PROTEIN AND PEPTIDE LETTERS

Complex Adaptations Can Drive the Evolution of the Capacitor [PSI+], Even with Realistic Rates of Yeast Sex

(2009) Cortland K. Griswold et al.   PLoS Genetics

Hsp104, Hsp70 and Hsp40 interplay regulates formation, growth and elimination of Sup35 prions

(2008) James Shorter et al.   EMBO JOURNAL

Newly identified prion linked to the chromatin-remodeling factor Swi1 in Saccharomyces cerevisiae

(2008) Zhiqiang Du et al.   NATURE GENETICS

Prion Switching in Response to Environmental Stress

(2008) Jens Tyedmers et al.   PLOS BIOLOGY