Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?
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Title
Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?
Authors
Keywords
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Journal
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
Volume 322, Issue 4, Pages 208-220
Publisher
Wiley
Online
2014-04-09
DOI
10.1002/jez.b.22571
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Note: Only part of the references are listed.- Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern
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- (2013) Robert J. Schmitz et al. NATURE
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- (2013) Heike Harzer et al. Nature Protocols
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- (2013) Stephane E. Castel et al. NATURE REVIEWS GENETICS
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- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
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- (2013) Aimee I. Badeaux et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Coordinate Regulation of DNA Methylation and H3K27me3 in Mouse Embryonic Stem Cells
- (2013) James A. Hagarman et al. PLoS One
- Hydrocarbons (jet fuel JP-8) induce epigenetic transgenerational inheritance of obesity, reproductive disease and sperm epimutations
- (2013) Rebecca Tracey et al. REPRODUCTIVE TOXICOLOGY
- A Histone Mutant Reproduces the Phenotype Caused by Loss of Histone-Modifying Factor Polycomb
- (2013) A. R. Pengelly et al. SCIENCE
- The adaptive invasion of epialleles in a heterogeneous environment
- (2013) Jemma L. Geoghegan et al. THEORETICAL POPULATION BIOLOGY
- RNA–Mediated Epigenetic Heredity Requires the Cytosine Methyltransferase Dnmt2
- (2013) Jafar Kiani et al. PLoS Genetics
- Programming of DNA Methylation Patterns
- (2012) Howard Cedar et al. Annual Review of Biochemistry
- Methods for Identifying Higher-Order Chromatin Structure
- (2012) Samin A. Sajan et al. Annual Review of Genomics and Human Genetics
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- (2012) Eugene Houseman et al. BMC BIOINFORMATICS
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- (2012) Alyson Ashe et al. CELL
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- (2012) Roberto Bonasio et al. CURRENT BIOLOGY
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- (2012) H. Ishizu et al. GENES & DEVELOPMENT
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- (2012) Aaron L. Statham et al. GENOME RESEARCH
- Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
- (2012) Arie B. Brinkman et al. GENOME RESEARCH
- Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
- (2012) J. Gertz et al. GENOME RESEARCH
- A chromatin link to caste identity in the carpenter ant Camponotus floridanus
- (2012) D. F. Simola et al. GENOME RESEARCH
- Widespread plasticity in CTCF occupancy linked to DNA methylation
- (2012) H. Wang et al. GENOME RESEARCH
- Epigenetic state and expression of imprinted genes in umbilical cord correlates with growth parameters in human pregnancy
- (2012) Ai Lin Lim et al. JOURNAL OF MEDICAL GENETICS
- Phenotypic diversity and epigenomic variation – The utility of mass spectrometric analysis of DNA methylation
- (2012) Cameron McLean et al. Journal of Proteomics
- The Evolution of Invertebrate Gene Body Methylation
- (2012) S. Sarda et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells
- (2012) Stefanie Seisenberger et al. MOLECULAR CELL
- Reversible switching between epigenetic states in honeybee behavioral subcastes
- (2012) Brian R Herb et al. NATURE NEUROSCIENCE
- ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions
- (2012) Terrence S. Furey NATURE REVIEWS GENETICS
- Histone methylation: a dynamic mark in health, disease and inheritance
- (2012) Eric L. Greer et al. NATURE REVIEWS GENETICS
- Functions of DNA methylation: islands, start sites, gene bodies and beyond
- (2012) Peter A. Jones NATURE REVIEWS GENETICS
- RNA modulation of the human DNA methyltransferase 3A
- (2012) Celeste Holz-Schietinger et al. NUCLEIC ACIDS RESEARCH
- Comparison of alignment software for genome-wide bisulphite sequence data
- (2012) Aniruddha Chatterjee et al. NUCLEIC ACIDS RESEARCH
- High Resolution Methylome Map of Rat Indicates Role of Intragenic DNA Methylation in Identification of Coding Region
- (2012) Satish Sati et al. PLoS One
- Dioxin (TCDD) Induces Epigenetic Transgenerational Inheritance of Adult Onset Disease and Sperm Epimutations
- (2012) Mohan Manikkam et al. PLoS One
- DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees
- (2012) S. Foret et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pesticide and insect repellent mixture (permethrin and DEET) induces epigenetic transgenerational inheritance of disease and sperm epimutations
- (2012) Mohan Manikkam et al. REPRODUCTIVE TOXICOLOGY
- Exploring epiallele stability in a population-epigenetic model
- (2012) Jemma L. Geoghegan et al. THEORETICAL POPULATION BIOLOGY
- Active DNA demethylation by Gadd45 and DNA repair
- (2012) Christof Niehrs et al. TRENDS IN CELL BIOLOGY
- FACS Purification and Transcriptome Analysis of Drosophila Neural Stem Cells Reveals a Role for Klumpfuss in Self-Renewal
- (2012) Christian Berger et al. Cell Reports
- Inheritance of Stress-Induced, ATF-2-Dependent Epigenetic Change
- (2011) Ki-Hyeon Seong et al. CELL
- Genomic imprinting: recognition and marking of imprinted loci
- (2011) Lara K Abramowitz et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2011) Huiming Zhang et al. CURRENT OPINION IN PLANT BIOLOGY
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- (2011) K. M. Godfrey et al. DIABETES
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- (2011) Robert C. Spitale et al. Epigenetics
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- (2011) A. Ishikawa et al. INSECT MOLECULAR BIOLOGY
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- (2011) Atanu Maiti et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
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- Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA
- (2011) Y.-F. He et al. SCIENCE
- Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
- (2011) S. Ito et al. SCIENCE
- A Pre-mRNA–Associating Factor Links Endogenous siRNAs to Chromatin Regulation
- (2011) Kirk B. Burkhart et al. PLoS Genetics
- DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
- (2011) Jordana T Bell et al. GENOME BIOLOGY
- High Sensitivity 5-hydroxymethylcytosine Detection in Balb/C Brain Tissue
- (2011) Theodore Davis et al. Jove-Journal of Visualized Experiments
- Developmental Origins of Health and Disease: New Insights
- (2010) Mark A. Hanson et al. BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY
- Nucleosome-Interacting Proteins Regulated by DNA and Histone Methylation
- (2010) Till Bartke et al. CELL
- DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation
- (2010) Dengke K. Ma et al. CELL CYCLE
- Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses
- (2010) Tim F. Oberlander et al. Epigenetics
- Conserved DNA methylation inGadd45a-/-mice
- (2010) Nora Engel et al. Epigenetics
- Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples
- (2010) K. E. Varley et al. GENOME RESEARCH
- Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
- (2010) R. Shoemaker et al. GENOME RESEARCH
- Epigenomic plasticity within populations: its evolutionary significance and potential
- (2010) L J Johnson et al. HEREDITY
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- Drosophila Piwi functions in Hsp90-mediated suppression of phenotypic variation
- (2010) Vamsi K Gangaraju et al. NATURE GENETICS
- Principles and challenges of genome-wide DNA methylation analysis
- (2010) Peter W. Laird NATURE REVIEWS GENETICS
- Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing
- (2010) Oliver Bell et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Phenotypic plasticity in development and evolution: facts and concepts
- (2010) G. Fusco et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Epigenetic Transgenerational Actions of Vinclozolin on Promoter Regions of the Sperm Epigenome
- (2010) Carlos Guerrero-Bosagna et al. PLoS One
- Gemcitabine Functions Epigenetically by Inhibiting Repair Mediated DNA Demethylation
- (2010) Andrea Schäfer et al. PLoS One
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Translating environmental gradients into discontinuous reaction norms via hormone signalling in a polyphenic butterfly
- (2010) V. Oostra et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Specific transgenerational imprinting effects of the endocrine disruptor methoxychlor on male gametes
- (2010) Christelle Stouder et al. REPRODUCTION
- Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes
- (2010) M.-C. Tsai et al. SCIENCE
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- Epigenetic Reprogramming in Plant and Animal Development
- (2010) Suhua Feng et al. SCIENCE
- Developmental origins of health and disease: reducing the burden of chronic disease in the next generation
- (2010) Peter D Gluckman et al. Genome Medicine
- The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers
- (2010) Frank Lyko et al. PLOS BIOLOGY
- Epigenetic reprogramming and induced pluripotency
- (2009) K. Hochedlinger et al. DEVELOPMENT
- Active DNA demethylation and DNA repair
- (2009) Christof Niehrs DIFFERENTIATION
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing
- (2009) Katherine E. Varley et al. NUCLEIC ACIDS RESEARCH
- The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila
- (2009) Delphine Fagegaltier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease
- (2009) A. P. Feinberg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution
- (2009) Eva Jablonka et al. QUARTERLY REVIEW OF BIOLOGY
- Transgenerational effects of the endocrine disruptor vinclozolin on the methylation pattern of imprinted genes in the mouse sperm
- (2009) Christelle Stouder et al. REPRODUCTION
- Neuronal Activity-Induced Gadd45b Promotes Epigenetic DNA Demethylation and Adult Neurogenesis
- (2009) D. K. Ma et al. SCIENCE
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- (2009) E. Lieberman-Aiden et al. SCIENCE
- Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
- (2009) M. Tahiliani et al. SCIENCE
- Histone modifying enzymes: Structures, mechanisms, and specificities
- (2008) Ronen Marmorstein et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Maternal regulation of estrogen receptor α methylation
- (2008) F CHAMPAGNE et al. CURRENT OPINION IN PHARMACOLOGY
- RNA Induction and Inheritance of Epigenetic Cardiac Hypertrophy in the Mouse
- (2008) Kay D. Wagner et al. DEVELOPMENTAL CELL
- Small RNA guides for de novo DNA methylation in mammalian germ cells
- (2008) A. A. Aravin et al. GENES & DEVELOPMENT
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
- An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing
- (2008) J. Brennecke et al. SCIENCE
- Nutritional Control of Reproductive Status in Honeybees via DNA Methylation
- (2008) R. Kucharski et al. SCIENCE
- GADD45A Does Not Promote DNA Demethylation
- (2008) Seung-Gi Jin et al. PLoS Genetics
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