Core Genome Multilocus Sequence Typing: a Standardized Approach for Molecular Typing of Mycoplasma gallisepticum

Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes

(2016) Yi Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Strain-Specific Sequences That Distinguish a Mycoplasma gallisepticum Vaccine Strain from Field Isolates

(2016) Camir Ricketts et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Development of multilocus sequence typing (MLST) assay for Mycoplasma iowae

(2016) Mostafa Ghanem et al.   VETERINARY MICROBIOLOGY

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

(2015) Jason C. Kwong et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium

(2015) Mark de Been et al.   JOURNAL OF CLINICAL MICROBIOLOGY

BacWGSTdb, a database for genotyping and source tracking bacterial pathogens

(2015) Zhi Ruan et al.   NUCLEIC ACIDS RESEARCH

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

(2015) Holly B Bratcher et al.   BMC GENOMICS

Rapid High Resolution Genotyping of Francisella tularensis by Whole Genome Sequence Comparison of Annotated Genes (“MLST+”)

(2015) Markus H. Antwerpen et al.   PLoS One

Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011–2013

(2014) D. Schmid et al.   CLINICAL MICROBIOLOGY AND INFECTION

Bacterial Whole-Genome Sequencing Revisited: Portable, Scalable, and Standardized Analysis for Typing and Detection of Virulence and Antibiotic Resistance Genes

(2014) S. R. Leopold et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-Genome-Based Mycobacterium tuberculosis Surveillance: a Standardized, Portable, and Expandable Approach

(2014) T. A. Kohl et al.   JOURNAL OF CLINICAL MICROBIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

(2013) Marcos Pérez-Losada et al.   INFECTION GENETICS AND EVOLUTION

Updating benchtop sequencing performance comparison

(2013) Sebastian Jünemann et al.   NATURE BIOTECHNOLOGY

MLST revisited: the gene-by-gene approach to bacterial genomics

(2013) Martin C. J. Maiden et al.   NATURE REVIEWS MICROBIOLOGY

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Multiple host transfers, but only one successful lineage in a continent-spanning emergent pathogen

(2013) W. M. Hochachka et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Genotyping Potential of the Mycoplasma synoviae vlhA Gene

(2012) Mohamed M. El-Gazzar et al.   AVIAN DISEASES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Ultrafast Evolution and Loss of CRISPRs Following a Host Shift in a Novel Wildlife Pathogen, Mycoplasma gallisepticum

(2012) Nigel F. Delaney et al.   PLoS Genetics

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter

(2012) Samuel K. Sheppard et al.   Genes

Characterization of a ts-11–like Mycoplasma gallisepticum Isolate from Commercial Broiler Chickens

(2011) M. El Gazzar et al.   AVIAN DISEASES

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Detection and molecular characterization of Mycoplasma gallisepticum field infection in TS-11-vaccinated broiler breeders

(2011) E. M. Abdelwhab et al.   JOURNAL OF APPLIED POULTRY RESEARCH

Core Proteome of the Minimal Cell: Comparative Proteomics of Three Mollicute Species

(2011) Gleb Y. Fisunov et al.   PLoS One

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

(2011) Alexander Mellmann et al.   PLoS One

The Development of Diagnostic Real-Time Taqman PCRs for The Four Pathogenic Avian Mycoplasmas

(2009) Ziv Raviv et al.   AVIAN DISEASES

Control of Avian Mycoplasma Infections in Commercial Poultry

(2008) S. H. Kleven   AVIAN DISEASES

Microbiology in the post-genomic era

(2008) Duccio Medini et al.   NATURE REVIEWS MICROBIOLOGY