Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

An integrated semiconductor device enabling non-optical genome sequencing

(2011) Jonathan M. Rothberg et al.   NATURE

Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing

(2011) E. Kurt Lienau et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases

(2010) Daniel A. Janies et al.   CLADISTICS

Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups

(2010) W. R. Schwan et al.   MICROBIOLOGY-SGM

Chromosomal instability in enterohaemorrhagic Escherichia coli O157:H7: impact on adherence, tellurite resistance and colony phenotype

(2010) Martina Bielaszewska et al.   MOLECULAR MICROBIOLOGY

Complete Nucleotide Sequence of CTX-M-15-Plasmids from Clinical Escherichia coli Isolates: Insertional Events of Transposons and Insertion Sequences

(2010) Annemieke Smet et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Intrahost Genome Alterations in Enterohemorrhagic Escherichia coli

(2009) Alexander Mellmann et al.   GASTROENTEROLOGY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak

(2008) M. L. Kotewicz et al.   MICROBIOLOGY-SGM