Review
Chemistry, Medicinal
Shubham Kumar, Sandeep Rulhania, Shalini Jaswal, Vikramdeep Monga
Summary: Carbonic anhydrase is an important enzyme involved in various physiological and pathological processes, with 16 different isoforms in humans. Inhibitors targeting different isoforms of carbonic anhydrase have clinical applications in treating various diseases, but current drugs lack selectivity leading to undesired side effects. Efforts are being made to develop novel isoform-selective inhibitors of carbonic anhydrase for therapeutic implications.
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY
(2021)
Article
Chemistry, Medicinal
Muharrem Kalayci, Cuneyt Turkes, Mustafa Arslan, Yeliz Demir, Sukru Beydemir
Summary: This study designed novel multitarget drugs for Alzheimer's disease treatment and validated their effects through experiments and in silico monitoring. The results indicated that 6c, 6e, and 6f were the most promising derivatives in this series, showing potential for AD treatment with good multifunctional inhibition.
ARCHIV DER PHARMAZIE
(2021)
Article
Biochemistry & Molecular Biology
Toni C. Denner, Niels Heise, Julian Zacharias, Oliver Kraft, Sophie Hoenke, Rene Csuk
Summary: Acetylated triterpenoids were transformed into succinyl-spacered acetazolamide conjugates and tested for their inhibitory actvity on carbonic anhydrase II and cytotoxicity on human tumor cell lines and non-malignant fibroblasts. The conjugates derived from betulin and glycyrrhetinic acid showed the strongest inhibition, while those derived from ursolic or oleanolic acid were weaker inhibitors but had lower cytotoxicity. A betulin-derived conjugate displayed a Ki value of 0.129 μM and an EC50 value of 8.5 μM for human A375 melanoma cells.
Article
Chemistry, Medicinal
Mehtap Tugrak, Halise Inci Gul, Yeliz Demir, Serkan Levent, Ilhami Gulcin
Summary: New imidazolinone-based benzenesulfonamides were synthesized and evaluated for their potential as drug candidates by testing their activities against carbonic anhydrase (CA) and acetylcholinesterase (AChE) enzymes. Compounds with nitro group showed increased selectivity in CA inhibition compared to their hydrogen counterparts, while compounds with sulfanilamide moiety exhibited the best AChE inhibitory potency.
ARCHIV DER PHARMAZIE
(2021)
Article
Chemistry, Medicinal
Busra O. Aydin, Derya Anil, Yeliz Demir
Summary: In this study, new derivatives of pyrazolo[3,4-d]pyrimidine were synthesized by alkylating the N1 nitrogen atom. These compounds showed a broad spectrum of biological activity. The synthesis involved a series of steps to generate N-alkylated pyrazolo[3,4-d]pyrimidine derivatives, which were then tested for their ability to inhibit AChE and hCA isoforms. Among them, compound 10 exhibited the highest selectivity and potency as a CA I inhibitor.
ARCHIV DER PHARMAZIE
(2021)
Article
Biochemistry & Molecular Biology
Necla Oztaskin, Suleyman Goksu, Yeliz Demir, Ahmet Maras, Ilhami Gulcin
Summary: Nine new bromophenol derivatives were designed and synthesized in this study, showing effective inhibition effects on metabolic enzymes. These compounds may be used for the treatment of various diseases.
Article
Biochemistry & Molecular Biology
Rifat Emin Bora, Hayriye Genc Bilgicli, Eda Mehtap Uc, Mehmet Abdullah Alagoz, Mustafa Zengin, Ilhami Gulcin
Summary: Eight new aminothiols and three new sulfonic acid derivatives were synthesized and evaluated for their inhibitory effects on various enzymes. The results showed that these newly synthesized compounds exhibited significant inhibitory activity against carbonic anhydrase and cholinesterase, making them potential candidates for the treatment of glaucoma and Alzheimer's disease.
CHEMICO-BIOLOGICAL INTERACTIONS
(2022)
Article
Chemistry, Physical
Zuhal Alim, Turgay Tunc, Nadir Demirel, Aslihan Guenel, Nurcan Karacan
Summary: Acetylcholinesterase (AChE) and carbonic anhydrase I (CA-I) and II (CA-II) are important metabolic enzymes. This study synthesized four benzimidazole acetamide derivatives and investigated their inhibition effects on AChE, hCA-I, and hCA-II. The results showed that these compounds exhibited strong inhibition effects on AChE and carbonic anhydrase.
JOURNAL OF MOLECULAR STRUCTURE
(2022)
Article
Chemistry, Physical
Serdar Burmaoglu, Elif Akin Kazancioglu, Mustafa Z. Kazancioglu, Ruya Saglamtas, Gozde Yalcin, Ilhami Gulcin, Oztekin Algul
Summary: This study synthesized new biphenyl-substituted chalcone derivatives and evaluated their inhibitory activity against various enzymes. The results showed that these derivatives exhibited effective inhibition against the enzymes and have potential for the development of new drugs for the treatment of diverse diseases.
JOURNAL OF MOLECULAR STRUCTURE
(2022)
Article
Biochemistry & Molecular Biology
Mostafa M. Ghorab, Aiten M. Soliman, Silvia Bua, Claudiu T. Supuran
Summary: A library of iodoquinazolinones with benzenesulfonamide moiety was synthesized as hCA inhibitors, among which compounds 12 and 15 showed high activity and selectivity against tumor-specific isoforms.
BIOORGANIC CHEMISTRY
(2021)
Article
Chemistry, Medicinal
Musa Erdogan, Leyla Polat Kose, Selcuk Essiz, Ilhami Gulcin
Summary: This study focused on the design, synthesis, and characterization of a series of novel naphthol derivatives, which showed excellent enzyme inhibition effects in biological activity studies, particularly against human carbonic anhydrase (hCA) and acetylcholinesterase (AChE).
ARCHIV DER PHARMAZIE
(2021)
Article
Chemistry, Medicinal
Hayreddin Gezegen, Meliha B. Gurdere, Aysegul Dincer, Oguz Ozbek, Umit M. Kocyigit, Parham Taslimi, Burak Tuzun, Yakup Budak, Mustafa Ceylan
Summary: A new class of cyanopyridine derivatives containing phenylurea unit was synthesized and tested against metabolic enzymes. The inhibition effects of these compounds were compared with standard enzyme inhibitors, and molecular docking calculations were conducted to evaluate their biological activities. Additionally, ADME/T analysis was performed to assess the potential drug properties of these new cyanopyridine derivatives.
ARCHIV DER PHARMAZIE
(2021)
Article
Biochemistry & Molecular Biology
Samet Poyraz, H. Ali Dondas, Cem Yamali, Samet Belveren, Yeliz Demir, Sabriye Aydinoglu, Naciye Yaktubay Dondas, Tugba Taskin-Tok, Senanur Tas, Mahmut Ulger, Jose M. Sansano
Summary: The synthesis and biological assessment of novel multi-functionalized pyrrolidine-containing benzenesulfonamides were reported. These compounds showed antimicrobial, antifungal, CAs inhibition, AChE inhibition, and DNA-binding effects. The most potent CAs inhibitor was compound 3b, while compounds 6a and 6b showed remarkable AChE inhibition effects. Additionally, compounds 6a-6c had moderate antituberculosis effects. The study also included molecular docking studies to evaluate the interaction of selected compounds against enzymes (CAs and AChE).
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Biochemistry & Molecular Biology
Nebih Lolak, Suleyman Akocak, Mustafa Durgun, Hatice Esra Duran, Adem Necip, Cuneyt Turkes, Mesut Isik, Sukru Beydemir
Summary: To discover alternative substances for treating Alzheimer's and Parkinson's disease, a series of novel derivatives were synthesized and their inhibitory capacities were evaluated against specific enzymes. The results showed high inhibitory activity and radical scavenging capabilities, which are important for the rational design and synthesis of new multifunctional inhibitors.
MOLECULAR DIVERSITY
(2023)
Article
Chemistry, Medicinal
Belgin Sever, Cuneyt Turkes, Mehlika D. Altintop, Yeliz Demir, Gulsen Akalin Ciftci, Sukru Beydemir
Summary: New hybrid thiazolyl-pyrazoline derivatives showed significant inhibitory effects on human carbonic anhydrase isoforms and acetylcholinesterase, with some compounds exhibiting superior inhibition compared to standard drugs. These compounds were non-cytotoxic to normal cells and their potential binding modes against metabolic enzymes were predicted through comprehensive ligand-receptor interaction analysis.
ARCHIV DER PHARMAZIE
(2021)
Article
Biochemistry & Molecular Biology
Armagan Gunsel, Bilge Yazar, Parham Taslimi, Yavuz Erden, Tugba Taskin-Tok, Hasan Piskin, Ahmet T. Bilgicli, M. Nilufer Yarasir, Ilhami Gulcin
Summary: In this study, a novel starting material was synthesized and its structure was verified. Several new phthalocyanine compounds were synthesized and characterized using various spectroscopic methods. These compounds showed inhibitory effects on acetylcholinesterase and alpha-glycosidase enzymes, and exhibited normal cytotoxic effects on cancer cells.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Biochemistry & Molecular Biology
Mustafa Abdullah Yilmaz, Parham Taslimi, Omer Kilic, Ilhami Gulcin, Abhijit Dey, Ercan Bursal
Summary: This ethnobotanical study investigated the chemical constituents and pharmacological activities of Achillea pseudoaleppica. The ethanol and water extracts of A. pseudoaleppica exhibited strong antioxidant properties and inhibited several enzymes. Quinic acid was identified as the most abundant phenolic compound in the extracts. The findings suggest that A. pseudoaleppica has potential therapeutic applications due to its rich phenolic content and pharmacological properties.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Chemistry, Medicinal
Saira Naseem, Zahid Shafiq, Parham Taslimi, Saghir Hussain, Tugba Taskin-Tok, Dursun Kisa, Aamer Saeed, Ahmed Temirak, Muhammad N. Tahir, Khawar Rauf, Ahmed El-Gokha
Summary: A series of xanthene-based thiazoles were synthesized and characterized. These compounds exhibited high inhibition potential against acetylcholinesterase, butyrylcholinesterase, alpha-amylase, and alpha-glycosidase enzymes at low concentrations. Among them, compounds 3b and 3p showed superior inhibitory potential compared to known commercial inhibitors. Molecular docking studies also revealed important interactions between these compounds and the target enzymes.
ARCHIV DER PHARMAZIE
(2023)
Article
Biochemistry & Molecular Biology
Mahmut O. Karaytug, Neslihan Balci, Fikret Turkan, Mahmut Gurbuz, Mehmet E. Demirkol, Zeynep Namli, Lut Tamam, Ilhami Gulcin
Summary: Cholinesterases and glutathione S-transferases (GSTs) play crucial roles in the biochemical processes of the nervous system and detoxification in the human body. Piperazine derivatives show potential therapeutic effects in neurological disorders and cancer research.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2023)
Article
Biology
Muzaffer Mutlu, Zeynebe Bingol, Eda Mehtap Uc, Ekrem Koksal, Ahmet C. Goren, Saleh H. Alwasel, Ilhami Gulcin
Summary: This study evaluated the antioxidant and antidiabetic properties of cinnamon leaf essential oil and determined its inhibitory effects on enzymes associated with metabolic diseases. Phenolic contents and essential oil profiles were analyzed. Cinnamon oil showed strong radical scavenging abilities and effectively inhibited carbonic anhydrase II, acetylcholinesterase, and alpha-amylase. This multidisciplinary study is valuable for further research on antioxidant properties and enzyme inhibition profiles of important plants and their oils.
Article
Biochemistry & Molecular Biology
Ali Sen, Busra Ertas, Ozge Cevik, Aybeniz Yildirim, Damla Gokceoglu Kayali, Dilek Akakin, Leyla Bitis, Goksel Sener
Summary: The effects of Cotinus coggygria ethanol extract (CCE) on colonic structure and inflammation in acetic acid-induced ulcerative colitis in rats were investigated. CCE was found to have a significant protective effect against colonic damage and a potential anti-inflammatory activity by regulating cytokine levels. Additionally, CCE exhibited strong antioxidant activity and a high content of polyphenolic compounds. These findings suggest that CCE could be a promising novel therapy for ulcerative colitis.
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Cahit Orek, Massimiliano Bartolomei, Cecilia Coletti, Niyazi Bulut
Summary: Gold(I) metal complexes have potential applications as therapeutic agents, and graphene and its derivatives show promise as drug nanocarriers. In this study, the adsorption of a gold(I) N-heterocyclic monocarbene on graphene was computationally investigated. The study found that the drug adsorption on graphene was very favorable, mainly driven by dispersion and electrostatic attraction.
Article
Biochemistry & Molecular Biology
Hasan Karagecili, Mustafa Abdullah Yilmaz, Adem Erturk, Hatice Kiziltas, Leyla Guven, Saleh H. Alwasel, Ilhami Gulcin
Summary: This study investigated the chemical composition and antioxidant activities of propolis, finding that it is rich in phenolic and flavonoid compounds with antioxidant, antimicrobial, and anticancer properties. Propolis extract also exhibited inhibitory activities against enzymes associated with diabetes, Alzheimer's disease, and glaucoma. Additionally, twenty-eight phenolic compounds were determined to be major organic compounds in propolis, making it a potential natural product for the treatment of various diseases.
Article
Toxicology
Ayse Seda Erarslan, Recep Ozmerdivenli, Ferhat Sirinyildiz, Ozge Cevik, Erkan Gumus, Gokhan Cesur
Summary: Ulcerative Colitis (UC) is a disease that negatively impacts quality of life and is characterized by oxidative stress, inflammation, and intestinal permeability. Vitamin D and Curcumin have beneficial pharmacological properties, such as antioxidant and anti-inflammatory effects. This study investigated the role of Vitamin D and Curcumin in an acetic acid-induced acute colitis model and found that they reduced inflammation and restored normal colon histoarchitecture, indicating their potential protective effects.
TOXICOLOGY MECHANISMS AND METHODS
(2023)
Article
Chemistry, Medicinal
Tenzile Alagoz, Fatma Gunes Caliskan, Hayriye Genc Bilgicli, Mustafa Zengin, Morteza Sadeghi, Parham Taslimi, Ilhami Gulcin
Summary: This study designed and synthesized a series of carvacrol-based thiosemicarbazide and 1,3,4-thiadiazole derivatives, and characterized their structures using nuclear magnetic resonance and high resolution mass spectroscopy. The compounds showed potent inhibitory activities against human carbonic anhydrase I and II, acetylcholinesterase, and butyrylcholinesterase enzymes compared to standard molecules. Molecular docking analysis identified some compounds with superior efficacy against specific enzymes.
ARCHIV DER PHARMAZIE
(2023)
Article
Biochemistry & Molecular Biology
Fatma Hamurcu, Ummuehan Ozdemir Ozmen, Ozan Sanli Senturk, Kerem Kaya, Sevki Adem, Buesra Aksoy Erden, Hasan Ufuk Celebioglu, Yavuz Erden, Parham Taslimi
Summary: A novel Schiff base compound was successfully synthesized and characterized, and its cytotoxicity, anti-bacterial properties, and enzyme inhibition were investigated. The compound showed high cellular toxicity, low antibacterial effect, and inhibitory effect against target enzymes. These results provide preliminary information for the compound's biological features and its potential applications in drug development.
CHEMISTRY & BIODIVERSITY
(2023)
Article
Biochemistry & Molecular Biology
Cahit Orek, Serhat Keser, Omer Kaygili, Piotr Zuchowski, Niyazi Bulut
Summary: In this study, the electrical, optical, and structural properties of a wurtzite-like zinc oxide (ZnO) nanostructure were analyzed theoretically and experimentally. The optical characteristics were investigated in relation to quantum confinement by studying two different ZnO clusters in nanowire structures. It was found that the band gap decreases with increasing number of atoms in the cluster due to quantum confinement. The CAM-B3LYP functional successfully reproduced the experimental data in this study and previously reported data.
JOURNAL OF MOLECULAR MODELING
(2023)
Article
Plant Sciences
Mehmet Nuri Atalara, Mine Kokturk, Fikret Altindag, Gunes Ozhan, Tevfik Ozen, Ibrahim Demirtas, Llhami Gulcini
Summary: St. John's wort, a popular medicinal plant, contains bioactive components that are beneficial for health. The extracts showed high survival rates and no significant changes in malformation and larval emergence in zebrafish experiments. However, dosage should be controlled below 10 mg/mL to avoid toxicity.
SOUTH AFRICAN JOURNAL OF BOTANY
(2023)
Article
Biochemistry & Molecular Biology
Erkan Oner, Yetkin Gok, Yeliz Demir, Tugba Taskin-Tok, Aydin Aktas, Ilhami Gulcin, Serap Yalin
Summary: This study presents the synthesis and characterization of a series of benzimidazolium salts, and investigates their enzyme inhibition abilities against acetylcholinesterase and carbonic anhydrase. The results show that these salts have potent inhibition effects. The pharmacokinetic properties of the compounds were also predicted.
CHEMISTRY & BIODIVERSITY
(2023)
Article
Multidisciplinary Sciences
Niyazi Bulut, Omer Kaygili, Ala Hamd Hssain, Sergey V. Dorozhkin, Benahmed Abdelghani, Cahit Orek, Hanifi Kebiroglu, Tankut Ates, Rebaz Obaid Kareem
Summary: The effects of Mg co-doping on the band structures and electronic properties of Zn-based hydroxyapatites were investigated theoretically. It was found that co-doping influenced the structural and electronic properties of the studied structures, leading to a decrease in lattice parameters and band gap energy with increasing doping levels. The results provide insights into the design and optimization of Zn-based hydroxyapatites for various applications.
IRANIAN JOURNAL OF SCIENCE
(2023)
Article
Biochemistry & Molecular Biology
Manigandan Nagarajan, Gobichettipalayam Balasubramaniam Maadurshni, Jeganathan Manivannan
Summary: This study found that exposure to BPA exacerbates hypertension-induced pathological changes, including renal fibrosis, oxidative stress, elevated angiotensin-converting enzyme activity, dysfunction of antioxidant and tricarboxylic acid cycle enzymes, tissue lipid abnormalities, and expression of inflammatory factors. In addition, high levels of BPA have dose-dependent effects on kidney cells, including oxidative stress, mitochondrial dysfunction, and lipid peroxidation. Therefore, a precise investigation of BPA exposure in hypertensive populations is highly recommended during risk assessment.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2024)
Article
Biochemistry & Molecular Biology
Haiping Bao, Qiang Zhang, Yu Li, Chen Nie
Summary: In this study, the role of circDLGAP4 in Parkinson's disease (PD) was investigated. The results showed that circDLGAP4 upregulated HMGA2 by recruiting EIF4A3, thus alleviating neuronal injury in PD.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2024)
Article
Biochemistry & Molecular Biology
Lina Yang, Tianwei He, Yanming Yu
Summary: This study found that uric acid induces kidney injury by inducing IL-17 expression, and treatment with anti-IL-17 antibody can alleviate uric acid-induced kidney injury.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2024)
Article
Biochemistry & Molecular Biology
Ediandra T. Castro, Amalia G. Alves, Daniela de Bittencourt Maia, Larissa S. Magalhaes, Mariana P. Paim, Filipe Penteado, Caroline S. Gomes, Eder J. Lenardao, Cesar A. Bruning, Cristiani F. Bortolatto
Summary: This study investigated the antioxidant activity and toxicity of selenium-containing compounds in liver tissue. The results showed that these compounds have potential antioxidant effects, which can be attributed to their ability to scavenge free radicals and mimic enzyme activity. Additionally, one of the compounds exhibited low toxicity.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2024)