Effects of host species and environment on the skin microbiome of Plethodontid salamanders

Landscape and water characteristics correlate with immune defense traits across Blanchard's cricket frog ( Acris blanchardi ) populations

(2016) Katherine L. Krynak et al.   BIOLOGICAL CONSERVATION

Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis

(2016) Eria A Rebollar et al.   ISME Journal

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

Diversity and evolution of the primate skin microbiome

(2016) Sarah E. Council et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

(2016) Elisabeth M. Bik et al.   Nature Communications

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

(2016) Andrew H. Loudon et al.   Frontiers in Microbiology

Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin

(2016) Li Huang et al.   Scientific Reports

Most of the Dominant Members of Amphibian Skin Bacterial Communities Can Be Readily Cultured

(2015) Jenifer B. Walke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A century of Batrachochytrium dendrobatidis in Illinois amphibians (1888–1989)

(2015) Brooke L. Talley et al.   BIOLOGICAL CONSERVATION

Variation in the Presence of Anti-Batrachochytrium dendrobatidis Bacteria of Amphibians Across Life Stages and Elevations in Ecuador

(2015) J. C. Bresciano et al.   EcoHealth

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

(2015) Jon G. Sanders et al.   Nature Communications

Panamanian frog species host unique skin bacterial communities

(2015) Lisa K. Belden et al.   Frontiers in Microbiology

Similarity and differentiation between bacteria associated with skin of salamanders (Plethodon jordani) and free-living assemblages

(2014) Benjamin M. Fitzpatrick et al.   FEMS MICROBIOLOGY ECOLOGY

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection

(2014) Ana Lokmer et al.   ISME Journal

Stability of Microbiota Facilitated by Host Immune Regulation: Informing Probiotic Strategies to Manage Amphibian Disease

(2014) Denise Küng et al.   PLoS One

Ex situ Diet Influences the Bacterial Community Associated with the Skin of Red-Eyed Tree Frogs (Agalychnis callidryas)

(2014) Rachael E. Antwis et al.   PLoS One

Unexpected Rarity of the Pathogen Batrachochytrium dendrobatidis in Appalachian Plethodon Salamanders: 1957–2011

(2014) Carly Muletz et al.   PLoS One

Rapid changes in the gut microbiome during human evolution

(2014) Andrew H. Moeller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental variability counteracts priority effects to facilitate species coexistence: evidence from nectar microbes

(2014) C. M. Tucker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recent introduction of a chytrid fungus endangers Western Palearctic salamanders

(2014) A. Martel et al.   SCIENCE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Diversity of the skin microbiota of fishes: evidence for host species specificity

(2013) Andrea Larsen et al.   FEMS MICROBIOLOGY ECOLOGY

The biogeography of stream bacteria

(2013) Gavin Lear et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The temperature response of soil microbial efficiency and its feedback to climate

(2013) Serita D. Frey et al.   Nature Climate Change

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Soil bioaugmentation with amphibian cutaneous bacteria protects amphibian hosts from infection by Batrachochytrium dendrobatidis

(2012) Carly R. Muletz et al.   BIOLOGICAL CONSERVATION

Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians

(2012) EA Meyer et al.   DISEASES OF AQUATIC ORGANISMS

How to assemble a beneficial microbiome in three easy steps

(2012) István Scheuring et al.   ECOLOGY LETTERS

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Surviving Chytridiomycosis: Differential Anti-Batrachochytrium dendrobatidis Activity in Bacterial Isolates from Three Lowland Species of Atelopus

(2012) Sandra V. Flechas et al.   PLoS One

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

The contribution of skin antimicrobial peptides to the system of innate immunity in anurans

(2010) J. Michael Conlon   CELL AND TISSUE RESEARCH

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Contrasting patterns in elevational diversity between microorganisms and macroorganisms

(2010) Jianjun Wang et al.   JOURNAL OF BIOGEOGRAPHY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Cutaneous Bacteria of the Redback Salamander Prevent Morbidity Associated with a Lethal Disease

(2010) Matthew H. Becker et al.   PLoS One

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Addition of antifungal skin bacteria to salamanders ameliorates the effects of chytridiomycosis

(2008) RN Harris et al.   DISEASES OF AQUATIC ORGANISMS

Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus

(2008) Robert M. Brucker et al.   JOURNAL OF CHEMICAL ECOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS