Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection

Persistence, Seasonal Dynamics and Pathogenic Potential of Vibrio Communities from Pacific Oyster Hemolymph

(2014) Carolin C. Wendling et al.   PLoS One

Increases in the Amounts of Vibrio spp. in Oysters upon Addition of Exogenous Bacteria

(2013) Brett Froelich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relative contribution of reproductive investment, thermal stress and Vibrio infection to summer mortality phenomena in Pacific oysters

(2013) Carolin C. Wendling et al.   AQUACULTURE

Disturbance induced decoupling between host genetics and composition of the associated microbiome

(2013) Karl Wegner et al.   BMC MICROBIOLOGY

Molecular community profiling reveals impacts of time, space, and disease status on the bacterial community associated with the Caribbean spongeAplysina cauliformis

(2013) Julie B. Olson et al.   FEMS MICROBIOLOGY ECOLOGY

Changes in the composition and diversity of the bacterial microbiota associated with oysters (Crassostrea corteziensis,Crassostrea gigasandCrassostrea sikamea) during commercial production

(2013) Natalia Trabal Fernández et al.   FEMS MICROBIOLOGY ECOLOGY

Antimicrobial peptides in oyster hemolymph: The bacterial connection

(2013) Diane Defer et al.   FISH & SHELLFISH IMMUNOLOGY

Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress

(2013) Lu Fan et al.   ISME Journal

Microbial communities of the carapace, gut, and hemolymph of the Atlantic blue crab, Callinectes sapidus

(2013) Carrie E. Givens et al.   MARINE BIOLOGY

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets

(2013) Lin Cai et al.   PLoS One

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Till Death Do Us Part: Stable Sponge-Bacteria Associations under Thermal and Food Shortage Stresses

(2013) Lucía Pita et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate Change and Infectious Diseases: From Evidence to a Predictive Framework

(2013) S. Altizer et al.   SCIENCE

Bacterial communities and species-specific associations with the mucus of Brazilian coral species

(2013) Camila Carlos et al.   Scientific Reports

Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance

(2012) Patrick M. Erwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in gut-associated flora and bacterial digestive enzymes during the development stages of abalone (Haliotis diversicolor)

(2012) Jing Zhao et al.   AQUACULTURE

Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge,Rhopaloeides odorabile

(2012) Rachel Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Immune response and energy metabolism of Chlamys farreri under Vibrio anguillarum challenge and high temperature exposure

(2012) Xingqiang Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Optimal acclimation periods for oysters in laboratory-based experiments

(2012) Emma L. Thompson et al.   JOURNAL OF MOLLUSCAN STUDIES

Parasites in the Wadden Sea food web

(2012) David W. Thieltges et al.   JOURNAL OF SEA RESEARCH

Molecular Analysis of Bacterial Microbiota Associated with Oysters (Crassostrea gigas and Crassostrea corteziensis) in Different Growth Phases at Two Cultivation Sites

(2012) Natalia Trabal et al.   MICROBIAL ECOLOGY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature

(2012) Martin J. Sergeant et al.   PLoS One

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

(2012) Gary M. King et al.   PLoS One

Relating Phylogenetic and Functional Diversity among Denitrifiers and Quantifying their Capacity to Predict Community Functioning

(2012) Joana Falcão Salles et al.   Frontiers in Microbiology

The Antimicrobial Defense of the Pacific Oyster, Crassostrea gigas. How Diversity may Compensate for Scarcity in the Regulation of Resident/Pathogenic Microflora

(2012) Paulina Schmitt et al.   Frontiers in Microbiology

The generation and maintenance of diversity in microbial communities

(2011) Noah Fierer et al.   AMERICAN JOURNAL OF BOTANY

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea

(2011) Dror Zurel et al.   ENVIRONMENTAL MICROBIOLOGY

Water quality assessment by means of HFNI valvometry and high-frequency data modeling

(2011) Mohamedou Sow et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus

(2011) Nikole E Kimes et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Seasonal dynamics of cell numbers and biodiversity of marine heterotrophic bacteria inhabiting invertebrates and water ecosystems of the Peter the Great Bay, Sea of Japan

(2011) I. A. Beleneva et al.   MICROBIOLOGY

Who Is in There? Exploration of Endophytic Bacteria within the Siphonous Green Seaweed Bryopsis (Bryopsidales, Chlorophyta)

(2011) Joke Hollants et al.   PLoS One

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal stability and species specificity in bacteria associated with the bottlenose dolphins respiratory system

(2011) Nicole Lima et al.   Environmental Microbiology Reports

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Metapopulation structure of Vibrionaceae among coastal marine invertebrates

(2010) Sarah P. Preheim et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for a temperature acclimation mechanism in bacteria: an empirical test of a membrane-mediated trade-off

(2010) Edward K. Hall et al.   FUNCTIONAL ECOLOGY

Diversity of vibrios in the haemolymph of the spider crab Maja brachydactyla

(2010) B. Gomez-Gil et al.   JOURNAL OF APPLIED MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels

(2009) L. Collado et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Massive parallel MHC genotyping: titanium that shines

(2009) K. MATHIAS WEGNER   MOLECULAR ECOLOGY

Summer mortality of the Pacific oyster, Crassostrea gigas, in the Irish Sea: The influence of temperature and nutrients on health and survival

(2008) Shelagh K. Malham et al.   AQUACULTURE

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

Differential localization and bacteriostasis of Vibrio campbellii among tissues of the Eastern oyster, Crassostrea virginica

(2008) Heidi R. Williams et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Re-emergence of Vibrio tubiashii in bivalve shellfish aquaculture: severity, environmental drivers, geographic extent and management

(2008) RA Elston et al.   DISEASES OF AQUATIC ORGANISMS

Differential involvement of mussel hemocyte sub-populations in the clearance of bacteria

(2008) Maria-Giovanna Parisi et al.   FISH & SHELLFISH IMMUNOLOGY

Summer immune depression associated with increased susceptibility of the European abalone, Haliotis tuberculata to Vibrio harveyi infection

(2008) Marie-Agnès Travers et al.   FISH & SHELLFISH IMMUNOLOGY

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

(2008) Stephen J Bent et al.   ISME Journal

TheVibriocore group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals

(2008) J.M. Cervino et al.   JOURNAL OF APPLIED MICROBIOLOGY

Pathology and mass mortality of Pacific oysters,Crassostrea gigas(Thunberg), in 2005 at the East Frisian coast, Germany

(2008) B T Watermann et al.   JOURNAL OF FISH DISEASES

Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea

(2008) Ju Young Chang et al.   JOURNAL OF INFECTIOUS DISEASES

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics