Panamanian frog species host unique skin bacterial communities

Most of the Dominant Members of Amphibian Skin Bacterial Communities Can Be Readily Cultured

(2015) Jenifer B. Walke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coqui frogs persist with the deadly chytrid fungus despite a lack of defensive antimicrobial peptides

(2015) LA Rollins-Smith et al.   DISEASES OF AQUATIC ORGANISMS

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogenBatrachochytrium dendrobatidis

(2015) Matthew H. Becker et al.   MOLECULAR ECOLOGY

Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus

(2015) M. H. Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Beta Regression inR

(2015) Francisco Cribari-Neto et al.   Journal of Statistical Software

Nonlethal amphibian skin swabbing of cutaneous natural products for HPLC fingerprinting

(2014) Thomas P. Umile et al.   Analytical Methods

Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome

(2014) Ohad Manor et al.   Cell Metabolism

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Amphibians acquire resistance to live and dead fungus overcoming fungal immunosuppression

(2014) Taegan A. McMahon et al.   NATURE

The Lethal Fungus Batrachochytrium dendrobatidis Is Present in Lowland Tropical Forests of Far Eastern Panamá

(2014) Eria A. Rebollar et al.   PLoS One

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges

(2014) Cole G. Easson et al.   Frontiers in Microbiology

Confronting inconsistencies in the amphibian-chytridiomycosis system: implications for disease management

(2013) Matthew D. Venesky et al.   BIOLOGICAL REVIEWS

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

(2012) Noah Fierer et al.   Annual Review of Ecology Evolution and Systematics

Screening bacterial metabolites for inhibitory effects against Batrachochytrium dendrobatidis using a spectrophotometric assay

(2012) SC Bell et al.   DISEASES OF AQUATIC ORGANISMS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Defining the human microbiome

(2012) Luke K Ursell et al.   NUTRITION REVIEWS

Ecophysiology meets conservation: understanding the role of disease in amphibian population declines

(2012) A. R. Blaustein et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Surviving Chytridiomycosis: Differential Anti-Batrachochytrium dendrobatidis Activity in Bacterial Isolates from Three Lowland Species of Atelopus

(2012) Sandra V. Flechas et al.   PLoS One

The complexity of amphibian population declines: understanding the role of cofactors in driving amphibian losses

(2011) Andrew R. Blaustein et al.   Annals of the New York Academy of Sciences

Ubiquity of the Pathogenic Chytrid Fungus, Batrachochytrium dendrobatidis, in Anuran Communities in Panamá

(2011) Vanessa L. Kilburn et al.   EcoHealth

Motile Zoospores of Batrachochytrium dendrobatidis Move Away from Antifungal Metabolites Produced by Amphibian Skin Bacteria

(2011) Brianna A. Lam et al.   EcoHealth

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors

(2011) Aline Frossard et al.   ISME Journal

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

Cutaneous Bacteria of the Redback Salamander Prevent Morbidity Associated with a Lethal Disease

(2010) Matthew H. Becker et al.   PLoS One

Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities

(2010) Suleyman Yildirim et al.   PLoS One

Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama

(2010) A. J. Crawford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterially Produced Metabolite Violacein Is Associated with Survival of Amphibians Infected with a Lethal Fungus

(2009) M. H. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Selecting for extinction: nonrandom disease-associated extinction homogenizes amphibian biotas

(2009) Kevin G. Smith et al.   ECOLOGY LETTERS

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Chytridiomycosis and Amphibian Population Declines Continue to Spread Eastward in Panama

(2008) Douglas C. Woodhams et al.   EcoHealth

Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus

(2008) Robert M. Brucker et al.   JOURNAL OF CHEMICAL ECOLOGY

Sure independence screening for ultrahigh dimensional feature space

(2008) Jianqing Fan et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY