RNA Sequencing and Coexpression Analysis Reveal Key Genes Involved in α-Linolenic Acid Biosynthesis in Perilla frutescens Seed

Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis

(2017) Juan Du et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome analysis and identification of genes associated with ω-3 fatty acid biosynthesis in Perilla frutescens (L.) var. frutescens

(2016) Hyun Uk Kim et al.   BMC GENOMICS

Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage

(2016) Xiaoming Song et al.   BMC GENOMICS

Identification and characterization of AP2/ERF transcription factors in moso bamboo (Phyllostachys edulis)

(2016) Z. Huang et al.   MOLECULAR BIOLOGY

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

(2016) Massimo Iorizzo et al.   NATURE GENETICS

Gene expression profiling during seed-filling process in peanut with emphasis on oil biosynthesis networks

(2016) Kapil Gupta et al.   PLANT SCIENCE

Coexpression Network Analysis of Benign and Malignant Phenotypes of SIV-Infected Sooty Mangabey and Rhesus Macaque

(2016) Zhao-Wan Yang et al.   PLoS One

Genome-wide identification and characterization of the bHLH gene family in tomato

(2015) Hua Sun et al.   BMC GENOMICS

Fatty acid composition of developing tree peony (Paeonia section Moutan DC.) seeds and transcriptome analysis during seed development

(2015) Shan-Shan Li et al.   BMC GENOMICS

Gene expression profiling for seed protein and oil synthesis during early seed development in soybean

(2015) Young Eun Jang et al.   Genes & Genomics

Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.)

(2015) Andrea Ariani et al.   MOLECULAR GENETICS AND GENOMICS

Overexpression of Arabidopsis WRI1 enhanced seed mass and storage oil content in Camelina sativa

(2015) Dahee An et al.   Plant Biotechnology Reports

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds

(2014) Seema Pradhan et al.   Frontiers in Plant Science

Fold of an oleosin targeted to cellular oil bodies

(2013) Jean-David Vindigni et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing

(2013) Chao Liang et al.   BMC GENOMICS

Coexpression Networks Implicate Human Midfetal Deep Cortical Projection Neurons in the Pathogenesis of Autism

(2013) A. Jeremy Willsey et al.   CELL

Identification of genetic variations of cultivated and weedy types of Perilla species in Korea and Japan using morphological and SSR markers

(2013) Kyu Jin Sa et al.   Genes & Genomics

Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish

(2013) Marie Filteau et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition

(2013) S. Dussert et al.   PLANT PHYSIOLOGY

De Novo Assembly of the Peanut (Arachis hypogaea L.) Seed Transcriptome Revealed Candidate Unigenes for Oil Accumulation Pathways

(2013) Dongmei Yin et al.   PLoS One

Long-chain polyunsaturated fatty acids (LCPUFA) from genesis to senescence: The influence of LCPUFA on neural development, aging, and neurodegeneration

(2013) Carola I.F. Janssen et al.   PROGRESS IN LIPID RESEARCH

Transcriptome analysis of Sacha Inchi (Plukenetia volubilis L.) seeds at two developmental stages

(2012) Xiaojuan Wang et al.   BMC GENOMICS

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Fatty Acid Composition of Developing Sea Buckthorn (Hippophae rhamnoides L.) Berry and the Transcriptome of the Mature Seed

(2012) Tahira Fatima et al.   PLoS One

PiNGO: a Cytoscape plugin to find candidate genes in biological networks

(2011) M. Smoot et al.   BIOINFORMATICS

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

(2011) Fred Y Peng et al.   BMC GENOMICS

Gene expression analysis of flax seed development

(2011) Prakash Venglat et al.   BMC PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis

(2010) Doris Albinsky et al.   AMINO ACIDS

Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model

(2010) Feng Chen et al.   BMC GENOMICS

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Significance of long-chain polyunsaturated fatty acids (PUFAs) for the development and behaviour of children

(2009) Jan Philipp Schuchardt et al.   EUROPEAN JOURNAL OF PEDIATRICS

Role of WRINKLED1 in the transcriptional regulation of glycolytic and fatty acid biosynthetic genes in Arabidopsis

(2009) Sébastien Baud et al.   PLANT JOURNAL

Influence of fatty acid composition of raw materials on biodiesel properties

(2008) María Jesús Ramos et al.   BIORESOURCE TECHNOLOGY

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL