Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis

The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication

(2016) Xiang Lu et al.   PLANT JOURNAL

Critical Roles of Vacuolar Invertase in Floral Organ Development and Male and Female Fertilities Are Revealed through Characterization ofGhVIN1-RNAi Cotton Plants

(2016) Lu Wang et al.   PLANT PHYSIOLOGY

Arabidopsis KLU homologue GmCYP78A72 regulates seed size in soybean

(2015) Baotian Zhao et al.   PLANT MOLECULAR BIOLOGY

Networks controlling seed size in Arabidopsis

(2015) Gregorio Orozco-Arroyo et al.   Plant Reproduction

Sucrose Metabolism: Gateway to Diverse Carbon Use and Sugar Signaling

(2014) Yong-Ling Ruan   Annual Review of Plant Biology

Flavonoids and the regulation of seed size inArabidopsis

(2014) James Doughty et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Evolution and association analysis of GmCYP78A10 gene with seed size/weight and pod number in soybean

(2014) Xiaobo Wang et al.   MOLECULAR BIOLOGY REPORTS

FERONIA Receptor Kinase Controls Seed Size in Arabidopsis thaliana

(2014) Feng Yu et al.   Molecular Plant

The Ubiquitin Receptor DA1 Regulates Seed and Organ Size by Modulating the Stability of the Ubiquitin-Specific Protease UBP15/SOD2 in Arabidopsis

(2014) L. Du et al.   PLANT CELL

Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxin

(2014) Antonella Locascio et al.   Frontiers in Plant Science

Ubiquitin-mediated control of seed size in plants

(2014) Na Li et al.   Frontiers in Plant Science

MYB56Encoding a R2R3 MYB Transcription Factor Regulates Seed Size inArabidopsis thaliana

(2013) Yanjie Zhang et al.   Journal of Integrative Plant Biology

Screening Chinese soybean genotypes for Agrobacterium-mediated genetic transformation suitability

(2013) Zhang-yue Song et al.   Journal of Zhejiang University-SCIENCE B

Control of Rice Embryo Development, Shoot Apical Meristem Maintenance, and Grain Yield by a Novel Cytochrome P450

(2013) Weibing Yang et al.   Molecular Plant

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

The Ubiquitin Receptor DA1 Interacts with the E3 Ubiquitin Ligase DA2 to Regulate Seed and Organ Size in Arabidopsis

(2013) T. Xia et al.   PLANT CELL

Brassinosteroid Regulates Seed Size and Shape in Arabidopsis

(2013) W.-B. Jiang et al.   PLANT PHYSIOLOGY

Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity

(2013) Sarah I. Jones et al.   PLoS One

Genome-Wide Expression Analysis of Soybean MADS Genes Showing Potential Function in the Seed Development

(2013) Cheng-Ming Fan et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Maternal control of seed size by EOD3/CYP78A6 in Arabidopsis thaliana

(2012) Wenjuan Fang et al.   PLANT JOURNAL

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Molecular regulation of seed and fruit set

(2012) Yong-Ling Ruan et al.   TRENDS IN PLANT SCIENCE

Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs

(2011) Ai-Hua Sha et al.   MOLECULAR BIOLOGY REPORTS

Accelerating yield potential in soybean: potential targets for biotechnological improvement

(2011) ELIZABETH A. AINSWORTH et al.   PLANT CELL AND ENVIRONMENT

The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development

(2011) Chiara Mizzotti et al.   PLANT JOURNAL

Global gene expression profiles in developing soybean seeds

(2011) Tomiko Asakura et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Flux of transcript patterns during soybean seed development

(2010) Sarah I Jones et al.   BMC GENOMICS

Transcriptional and hormonal signaling control of Arabidopsis seed development

(2010) Xiaodong Sun et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis

(2009) L.-Y. Zhang et al.   PLANT CELL

Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling

(2009) N. M. Adamski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of APETALA2 on embryo, endosperm, and seed coat development determine seed size in Arabidopsis

(2009) Masa-aki Ohto et al.   SEXUAL PLANT REPRODUCTION

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana

(2008) Y. Li et al.   GENES & DEVELOPMENT

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Brassinosteroids Regulate Grain Filling in Rice

(2008) C.-y. Wu et al.   PLANT CELL

The AGL62 MADS Domain Protein Regulates Cellularization during Endosperm Development in Arabidopsis

(2008) I.-H. Kang et al.   PLANT CELL

Transcriptome Analysis of Proliferating Arabidopsis Endosperm Reveals Biological Implications for the Control of Syncytial Division, Cytokinin Signaling, and Gene Expression Regulation

(2008) R. C. Day et al.   PLANT PHYSIOLOGY