Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.)

Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virus resistance in common bean

(2014) Marco H Bello et al.   BMC GENOMICS

Quantitative Trait Loci Associated with Drought Tolerance in Common Bean

(2014) Gerardine Mukeshimana et al.   CROP SCIENCE

Genome-wide identification and characterization of aquaporin genes (AQPs) in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2014) Peng Tao et al.   MOLECULAR GENETICS AND GENOMICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

CO2 Transport by PIP2 Aquaporins of Barley

(2014) Izumi C. Mori et al.   PLANT AND CELL PHYSIOLOGY

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean

(2014) E. Bellucci et al.   PLANT CELL

Plant aquaporins: Roles in plant physiology

(2013) Guowei Li et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana

(2013) Federico M. Giorgi et al.   BIOINFORMATICS

SRAdb: query and use public next-generation sequencing data from within R

(2013) Yuelin Zhu et al.   BMC BIOINFORMATICS

Transcriptional Analysis of Drought-Induced Genes in the Roots of a Tolerant Genotype of the Common Bean (Phaseolus vulgaris L.)

(2013) Gustavo Recchia et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gene duplication as a major force in evolution

(2013) SANTOSHKUMAR MAGADUM et al.   JOURNAL OF GENETICS

Genome-wide expression analysis of rice aquaporin genes and development of a functional gene network mediated by aquaporin expression in roots

(2013) Minh Xuan Nguyen et al.   PLANTA

Genome-Wide Sequence Characterization and Expression Analysis of Major Intrinsic Proteins in Soybean (Glycine max L.)

(2013) Da Yong Zhang et al.   PLoS One

Developmental and Environmental Regulation of Aquaporin Gene Expression across Populus Species: Divergence or Redundancy?

(2013) David Cohen et al.   PLoS One

Drought Tolerance in Wild Plant Populations: The Case of Common Beans (Phaseolus vulgaris L.)

(2013) Andrés J. Cortés et al.   PLoS One

Genome-Wide Identification and Expression Analysis of Aquaporins in Tomato

(2013) Stefan Reuscher et al.   PLoS One

Phenotyping common beans for adaptation to drought

(2013) Stephen E. Beebe et al.   Frontiers in Physiology

Multiple origins of the determinate growth habit in domesticated common bean (Phaseolus vulgaris)

(2012) Myounghai Kwak et al.   ANNALS OF BOTANY

Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

(2012) Andrés J Cortés et al.   BMC GENETICS

Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris L.

(2012) S Mamidi et al.   HEREDITY

Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation

(2012) D. Lopez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes

(2012) Elena Bitocchi et al.   NEW PHYTOLOGIST

Nucleotide diversity patterns at the drought-related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L.)

(2012) Andrés J. Cortés et al.   THEORETICAL AND APPLIED GENETICS

The common bean growth habit gene PvTFL1y is a functional homolog of Arabidopsis TFL1

(2012) S. L. Repinski et al.   THEORETICAL AND APPLIED GENETICS

The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic

(2011) Namiki Mitani-Ueno et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis thaliana aquaporin AtPIP1;2 is a physiologically relevant CO2 transport facilitator

(2011) Marlies Heckwolf et al.   PLANT JOURNAL

Solanaceae XIPs are plasma membrane aquaporins that facilitate the transport of many uncharged substrates

(2011) Gerd Patrick Bienert et al.   PLANT JOURNAL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research

(2010) A. Bräutigam et al.   PLANT BIOLOGY

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Aquaporins are multifunctional water and solute transporters highly divergent in living organisms

(2009) D. Gomes et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Co-expression networks: graph properties and topological comparisons

(2009) Ramon Xulvi-Brunet et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

(2009) Edouard I Severing et al.   BMC GENOMICS

Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: Characterization of XIP subfamily of aquaporins from evolutionary perspective

(2009) Anjali Gupta et al.   BMC PLANT BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Life with and without AtTIP1;1, an Arabidopsis aquaporin preferentially localized in the apposing tonoplasts of adjacent vacuoles

(2009) Azeez Beebo et al.   PLANT MOLECULAR BIOLOGY

Plant Aquaporins: Membrane Channels with Multiple Integrated Functions

(2008) Christophe Maurel et al.   Annual Review of Plant Biology

The effects of the loss of TIP1;1 and TIP1;2 aquaporins inArabidopsis thaliana

(2008) Manuela Désirée Schüssler et al.   PLANT JOURNAL

An N-terminal diacidic motif is required for the trafficking of maize aquaporins ZmPIP2;4 and ZmPIP2;5 to the plasma membrane

(2008) Enric Zelazny et al.   PLANT JOURNAL

Mechanism of selectivity in aquaporins and aquaglyceroporins

(2008) J. S. Hub et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA