Mixed effects: a unifying framework for statistical modelling in fisheries biology

The importance of spatial models for estimating the strength of density dependence

(2015) James T. Thorson et al.   ECOLOGY

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Spatial semiparametric models improve estimates of species abundance and distribution

(2014) Andrew Olaf Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

How variable is recruitment for exploited marine fishes? A hierarchical model for testing life history theory

(2014) James T. Thorson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Estimation of time-varying selectivity in stock assessments using state-space models

(2014) Anders Nielsen et al.   FISHERIES RESEARCH

Separating Intrinsic and Environmental Contributions to Growth and Their Population Consequences

(2013) Andrew O. Shelton et al.   AMERICAN NATURALIST

Integrated, age-structured, length-based stock assessment model with uncertain process variances, structural uncertainty, and environmental covariates: case of Central Baltic herring

(2013) Samu Mäntyniemi et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Productivity dynamics of Atlantic cod

(2013) Cóilín Minto et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Giants' shoulders 15 years later: lessons, challenges and guidelines in fisheries meta-analysis

(2013) James T Thorson et al.   FISH AND FISHERIES

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

(2013) Serinde J van Wijk et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Multigenerational hybridisation and its consequences for maternal effects in Atlantic salmon

(2013) P V Debes et al.   HEREDITY

Hierarchical Bayesian Spatio-Temporal Conway–Maxwell Poisson Models with Dynamic Dispersion

(2013) Guohui Wu et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Spatial variation buffers temporal fluctuations in early juvenile survival for an endangered Pacific salmon

(2013) James T. Thorson et al.   JOURNAL OF ANIMAL ECOLOGY

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

(2013) Benjamin M. Bolker et al.   Methods in Ecology and Evolution

A toolbox for fitting complex spatial point process models using integrated nested Laplace approximation (INLA)

(2012) Janine B. Illian et al.   Annals of Applied Statistics

Selection and estimation of sequential catch-at-age models

(2012) Gudmundur Gudmundsson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Maternal age, fecundity, egg quality, and recruitment: linking stock structure to recruitment using an age-structured Ricker model

(2012) Andrew O. Shelton et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Evolutionary assembly rules for fish life histories

(2012) Eric L Charnov et al.   FISH AND FISHERIES

Model performance analysis for Bayesian biomass dynamics models using bias, precision and reliability metrics

(2012) Kotaro Ono et al.   FISHERIES RESEARCH

Hiding or dead? A computationally efficient model of selective fisheries mortality

(2012) Ian G. Taylor et al.   FISHERIES RESEARCH

A comparison of stock assessment uncertainty estimates using maximum likelihood and Bayesian methods implemented with the same model framework

(2012) Ian J. Stewart et al.   FISHERIES RESEARCH

Development and application of an agent-based model to evaluate methods for estimating relative abundance indices for shoaling fish such as Pacific rockfish (Sebastes spp.)

(2012) J. T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Detecting Causality in Complex Ecosystems

(2012) G. Sugihara et al.   SCIENCE

Stochastic formulation of ecological models and their applications

(2012) Andrew J. Black et al.   TRENDS IN ECOLOGY & EVOLUTION

Towards a general, population-level understanding of eco-evolutionary change

(2012) Isabel M. Smallegange et al.   TRENDS IN ECOLOGY & EVOLUTION

A stepwise-selected spline approximation to time-varying parameters, with application to occupancy modelling

(2012) James T. Thorson et al.   Methods in Ecology and Evolution

Does increased information about reproductive potential result in better prediction of recruitment?

(2011) M. Joanne Morgan et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Estimation methods for nonlinear state-space models in ecology

(2011) M.W. Pedersen et al.   ECOLOGICAL MODELLING

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Models for Estimating Abundance from Repeated Counts of an Open Metapopulation

(2010) D. Dail et al.   BIOMETRICS

Shared challenges and common ground for Bayesian and classical analysis of hierarchical statistical models

(2009) Perry de Valpine   ECOLOGICAL APPLICATIONS

Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling

(2009) Noel Cressie et al.   ECOLOGICAL APPLICATIONS

Bayesian methods for hierarchical models: Are ecologists making a Faustian bargain

(2009) Subhash R. Lele et al.   ECOLOGICAL APPLICATIONS

An ecologist’s guide to the animal model

(2009) Alastair J. Wilson et al.   JOURNAL OF ANIMAL ECOLOGY

Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations

(2009) Håvard Rue et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

ESTIMABILITY OF DENSITY DEPENDENCE IN MODELS OF TIME SERIES DATA

(2008) Jonas Knape   ECOLOGY

CONTINUOUS-TIME CORRELATED RANDOM WALK MODEL FOR ANIMAL TELEMETRY DATA

(2008) Devin S. Johnson et al.   ECOLOGY