Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

(2017) Meinhard Simon et al.   ISME Journal

Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton

(2017) Heike M. Freese et al.   Frontiers in Microbiology

A Small Number of Phylogenetically Distinct Clonal Complexes Dominate a Coastal Vibrio cholerae Population

(2016) Paul C. Kirchberger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior

(2016) Clotilde Bongrand et al.   ISME Journal

Complete genome sequence of the siphovirus Roseophage RDJLΦ 2 infecting Roseobacter denitrificans OCh114

(2016) Yantao Liang et al.   Marine Genomics

Using Sex to Cure the Genome

(2016) Eduardo P. C. Rocha   PLOS BIOLOGY

Homologues of Genetic Transformation DNA Import Genes Are Required for Rhodobacter capsulatus Gene Transfer Agent Recipient Capability Regulated by the Response Regulator CtrA

(2015) Cedric A. Brimacombe et al.   JOURNAL OF BACTERIOLOGY

Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors

(2015) Lone Gram et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Plasmid curing and the loss of grip – The 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae

(2015) Oliver Frank et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12

(2015) Jianda Ji et al.   Standards in Genomic Sciences

Morphological Heterogeneity and Attachment of Phaeobacter inhibens

(2015) Einat Segev et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Automated classification of tailed bacteriophages according to their neck organization

(2014) Anne Lopes et al.   BMC GENOMICS

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization

(2014) Mina Bižić-Ionescu et al.   ENVIRONMENTAL MICROBIOLOGY

The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages

(2014) Reuben W. Nowell et al.   Genome Biology and Evolution

Evolutionary Ecology of the Marine Roseobacter Clade

(2014) Haiwei Luo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance

(2014) Francisco X. Nascimento et al.   PLoS One

Pervasive domestication of defective prophages by bacteria

(2014) L.-M. Bobay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T = BS107T)

(2014) Oliver Frank et al.   Standards in Genomic Sciences

Utilization of Heme as an Iron Source by Marine Alphaproteobacteria in the Roseobacter Clade

(2013) Kelly L. Roe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extrachromosomal, extraordinary and essential—the plasmids of the Roseobacter clade

(2013) Jörn Petersen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

opm: an R package for analysing OmniLog(R) phenotype microarray data

(2013) L. A. I. Vaas et al.   BIOINFORMATICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Molecular basis of active copper resistance mechanisms in Gram-negative bacteria

(2013) Kinga Bondarczuk et al.   CELL BIOLOGY AND TOXICOLOGY

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395

(2013) N. Buddruhs et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

IslandViewer update: improved genomic island discovery and visualization

(2013) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

(2013) Thomas Riedel et al.   PLoS One

ODoSE: A Webserver for Genome-Wide Calculation of Adaptive Divergence in Prokaryotes

(2013) Michiel Vos et al.   PLoS One

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

(2013) B. K. Swan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

(2013) Marco Dogs et al.   Standards in Genomic Sciences

Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life

(2012) Sebastian Thole et al.   ISME Journal

DNA packaging bias and differential expression of gene transfer agent genes within a population during production and release of the Rhodobacter capsulatus gene transfer agent, RcGTA

(2012) Alexander P. Hynes et al.   MOLECULAR MICROBIOLOGY

The Chlamydia psittaci Genome: A Comparative Analysis of Intracellular Pathogens

(2012) Anja Voigt et al.   PLoS One

Phaeobacter gallaeciensis Reduces Vibrio anguillarum in Cultures of Microalgae and Rotifers, and Prevents Vibriosis in Cod Larvae

(2012) Paul W. D’Alvise et al.   PLoS One

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Biogenic amines in fish, fish products and shellfish: a review

(2011) Ljerka Prester   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Genome Reduction by Deletion of Paralogs in the Marine Cyanobacterium Prochlorococcus

(2011) H. Luo et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

(2011) Mohammad R. Seyedsayamdost et al.   Nature Chemistry

Complete genome sequence of a marine roseophage provides evidence into the evolution of gene transfer agents in alphaproteobacteria

(2011) Sijun Huang et al.   Virology Journal

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes

(2011) Alexis P. Yelton et al.   PLoS Computational Biology

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

High Frequency of Horizontal Gene Transfer in the Oceans

(2010) L. D. McDaniel et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genomic taxonomy of vibrios

(2009) Cristiane C Thompson et al.   BMC EVOLUTIONARY BIOLOGY

Pathways and Substrate Specificity of DMSP Catabolism in Marine Bacteria of theRoseobacterClade

(2009) Jeroen S. Dickschat et al.   CHEMBIOCHEM

Green processes based on the extraction with pressurized fluids to obtain potent antimicrobials from Haematococcus pluvialis microalgae

(2009) S. Santoyo et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Phaeobacter and Ruegeria Species of the Roseobacter Clade Colonize Separate Niches in a Danish Turbot (Scophthalmus maximus)-Rearing Farm and Antagonize Vibrio anguillarum under Different Growth Conditions

(2008) C. H. Porsby et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

A comparison of homologous recombination rates in bacteria and archaea

(2008) Michiel Vos et al.   ISME Journal

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE