The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages

Fuzzy species revisited

(2013) William P Hanage   BMC BIOLOGY

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

T3DB: an integrated database for bacterial type III secretion system

(2012) Yejun Wang et al.   BMC BIOINFORMATICS

Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

(2012) Heath E O’Brien et al.   BMC MICROBIOLOGY

Evolving Concepts of Bacterial Species

(2012) Timothy G. Barraclough et al.   Evolutionary Biology

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

Pseudomonas savastanoipv.savastanoi: some like it knot

(2012) Cayo Ramos et al.   MOLECULAR PLANT PATHOLOGY

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

Pseudomonas syringae type III effector repertoires: last words in endless arguments

(2012) Magdalen Lindeberg et al.   TRENDS IN MICROBIOLOGY

Gene gain and loss events in Rickettsia and Orientia species

(2011) Kalliopi Georgiades et al.   Biology Direct

Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits

(2011) John Larsson et al.   BMC EVOLUTIONARY BIOLOGY

Next-generation genomics of Pseudomonas syringae

(2011) Heath E. O’Brien et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial species may exist, metagenomics reveal

(2011) Alejandro Caro-Quintero et al.   ENVIRONMENTAL MICROBIOLOGY

Inference of Gain and Loss Events from Phyletic Patterns Using Stochastic Mapping and Maximum Parsimony—A Simulation Study

(2011) Ofir Cohen et al.   Genome Biology and Evolution

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae

(2011) Vincent P. Richards et al.   INFECTION GENETICS AND EVOLUTION

Polaromonas glacialis sp. nov. and Polaromonas cryoconiti sp. nov., isolated from alpine glacier cryoconite

(2011) R. Margesin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Genome Sequence Analyses of Pseudomonas savastanoi pv. glycinea and Subtractive Hybridization-Based Comparative Genomics with Nine Pseudomonads

(2011) Mingsheng Qi et al.   PLoS One

Pseudomonas syringae pv. actinidiae Draft Genomes Comparison Reveal Strain-Specific Features Involved in Adaptation and Virulence to Actinidia Species

(2011) Simone Marcelletti et al.   PLoS One

Miniature Transposable Sequences Are Frequently Mobilized in the Bacterial Plant Pathogen Pseudomonas syringae pv. phaseolicola

(2011) Leire Bardaji et al.   PLoS One

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

(2011) Todd J. Treangen et al.   PLoS Genetics

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

GLOOME: gain loss mapping engine

(2010) O. Cohen et al.   BIOINFORMATICS

Evolutionary Dynamics of Complete Campylobacter Pan-Genomes and the Bacterial Species Concept

(2010) Tristan Lefébure et al.   Genome Biology and Evolution

Rapid phylogenetic identification of members of the Pseudomonas syringae species complex using the rpoD locus

(2010) N. Parkinson et al.   PLANT PATHOLOGY

Analysis of the natural infection of European horse chestnut (Aesculus hippocastanum) by Pseudomonas syringae pv. aesculi

(2010) H Steele et al.   PLANT PATHOLOGY

Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum

(2010) Sarah Green et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Inferring the Evolutionary History of the Plant Pathogen Pseudomonas syringae from Its Biogeography in Headwaters of Rivers in North America, Europe, and New Zealand

(2010) C. E. Morris et al.   mBio

On the origin of prokaryotic species

(2009) W. F. Doolittle et al.   GENOME RESEARCH

Inference and Characterization of Horizontally Transferred Gene Families Using Stochastic Mapping

(2009) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution ofPseudomonas syringaehost specificity and type III effector repertoires

(2009) MAGDALEN LINDEBERG et al.   MOLECULAR PLANT PATHOLOGY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Evolutionary patterns in prokaryotic genomes

(2008) Eduardo PC Rocha   CURRENT OPINION IN MICROBIOLOGY

High rates of lateral gene transfer are not due to false diagnosis of gene absence

(2008) Weilong Hao et al.   GENE

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

(2008) J. A. Reinhardt et al.   GENOME RESEARCH

The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle

(2008) Cindy E Morris et al.   ISME Journal

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Draft Genome Sequence ofPseudomonas syringaepv.tomatoT1 Reveals a Type III Effector Repertoire Significantly Divergent from That ofPseudomonas syringaepv.tomatoDC3000

(2008) Nalvo F. Almeida et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Isolation and identification of Pseudomonas syringae pv. aesculi causing bleeding canker of horse chestnut in the UK

(2008) J. F. Webber et al.   PLANT PATHOLOGY

Reclassification of subspecies of Acidovorax avenae as A. Avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al., 1978) comb. nov., and proposal of A. oryzae sp. nov.

(2008) Norman W. Schaad et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY