Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T = BS107T)

Extrachromosomal, extraordinary and essential—the plasmids of the Roseobacter clade

(2013) Jörn Petersen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

opm: an R package for analysing OmniLog(R) phenotype microarray data

(2013) L. A. I. Vaas et al.   BIOINFORMATICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395

(2013) N. Buddruhs et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

(2013) Marco Dogs et al.   Standards in Genomic Sciences

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade

(2013) Nora Buddruhs et al.   Standards in Genomic Sciences

Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements

(2013) Thomas Riedel et al.   Standards in Genomic Sciences

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T

(2013) Heike M. Freese et al.   Standards in Genomic Sciences

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

(2013) Paul G. Beyersmann et al.   Standards in Genomic Sciences

Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life

(2012) Sebastian Thole et al.   ISME Journal

Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics

(2012) Lea A. I. Vaas et al.   PLoS One

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta

(2012) Birte Abt et al.   Standards in Genomic Sciences

Draft Genome of Phaeobacter gallaeciensis ANG1, a Dominant Member of the Accessory Nidamental Gland of Euprymna scolopes

(2011) A. J. Collins et al.   JOURNAL OF BACTERIOLOGY

Roseobacticides: Small Molecule Modulators of an Algal-Bacterial Symbiosis

(2011) Mohammad R. Seyedsayamdost et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

(2011) Mohammad R. Seyedsayamdost et al.   Nature Chemistry

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

(2011) Iain Anderson et al.   PLoS One

Codivergence of Mycoviruses with Their Hosts

(2011) Markus Göker et al.   PLoS One

Genomes and Virulence Factors of Novel Bacterial Pathogens Causing Bleaching Disease in the Marine Red Alga Delisea pulchra

(2011) Neil Fernandes et al.   PLoS One

Complete genome sequence of Isosphaera pallida type strain (IS1BT)

(2011) Markus Göker et al.   Standards in Genomic Sciences

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

How Many Bootstrap Replicates Are Necessary?

(2010) Nicholas D. Pattengale et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales

(2010) J. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

N15: The linear phage–plasmid

(2010) Nikolai V. Ravin   PLASMID

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Metabolism among Members of theMethanosarcinaceaeInhabiting Freshwater and Saline Environments

(2010) Stefan Spring et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Diversity and evolution ofrepABCtype plasmids inRhodobacterales

(2009) Jörn Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

(2009) Konstantinos Liolios et al.   NUCLEIC ACIDS RESEARCH

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Phaeobacter and Ruegeria Species of the Roseobacter Clade Colonize Separate Niches in a Danish Turbot (Scophthalmus maximus)-Rearing Farm and Antagonize Vibrio anguillarum under Different Growth Conditions

(2008) C. H. Porsby et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic Dissection of Tropodithietic Acid Biosynthesis by Marine Roseobacters

(2008) H. Geng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Occurrence and Expression of Gene Transfer Agent Genes in Marine Bacterioplankton

(2008) E. J. Biers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of genomic island predictors using a comparative genomics approach

(2008) Morgan GI Langille et al.   BMC BIOINFORMATICS

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY