Barcode-based species delimitation in the marine realm: a test using Hexanauplia (Multicrustacea: Thecostraca and Copepoda)

Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts

(2014) Peter Huemer et al.   PLoS One

Known Knowns, Known Unknowns, Unknown Unknowns and Unknown Knowns in DNA Barcoding: A Comment on Dowton et al.

(2014) Rupert A. Collins et al.   SYSTEMATIC BIOLOGY

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data

(2014) Cuong Q. Tang et al.   Methods in Ecology and Evolution

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new set of primers for COI amplification from freshwater microcrustaceans

(2013) Sean Prosser et al.   Molecular Ecology Resources

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Assessing DNA Barcoding as a Tool for Species Identification and Data Quality Control

(2013) Yong-Yi Shen et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

(2013) Tomochika Fujisawa et al.   SYSTEMATIC BIOLOGY

Factors affecting species delimitations with the GMYC model: insights from a butterfly survey

(2013) Gerard Talavera et al.   Methods in Ecology and Evolution

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

(2012) Todd H. Oakley et al.   MOLECULAR BIOLOGY AND EVOLUTION

The seven deadly sins of DNA barcoding

(2012) R. A. Collins et al.   Molecular Ecology Resources

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Adjusted Wallace Coefficient as a Measure of Congruence between Typing Methods

(2011) Ana Severiano et al.   JOURNAL OF CLINICAL MICROBIOLOGY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Molecular phylogeny of the Calanoida (Crustacea: Copepoda)

(2011) Leocadio Blanco-Bercial et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Systematic and Evolutionary Insights Derived from mtDNA COI Barcode Diversity in the Decapoda (Crustacea: Malacostraca)

(2011) Joana Matzen da Silva et al.   PLoS One

jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

(2011) Martin Jones et al.   PLoS One

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition

(2009) Ann Bucklin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Molecular and morphological methods for identifying plankton: what makes a successful marriage?

(2009) G. B. McManus et al.   JOURNAL OF PLANKTON RESEARCH

DNA barcoding and the mediocrity of morphology

(2009) LAURENCE PACKER et al.   Molecular Ecology Resources