Impact of drinking water treatment and distribution on the microbiome continuum: an ecological disturbance's perspective

Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters

(2016) Arda Gülay et al.   ISME Journal

Molecular Detection ofLegionellaspp. and their associations withMycobacteriumspp.,Pseudomonas aeruginosaand amoeba hosts in a drinking water distribution system

(2016) J. Lu et al.   JOURNAL OF APPLIED MICROBIOLOGY

How do you like your tap water?

(2016) F. Rosario-Ortiz et al.   SCIENCE

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Drinking water microbiology — from measurement to management

(2015) Caitlin R Proctor et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of a pH and detergent-tolerant, cold-adapted type I pullulanase from Exiguobacterium sp. SH3

(2015) Sarah Rajaei et al.   EXTREMOPHILES

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

(2015) Fangqiong Ling et al.   ISME Journal

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

(2015) Stephen Nayfach et al.   GENOME BIOLOGY

Effect of Common Drinking Water Disinfectants, Chlorine and Heat, on Free Legionella and Amoebae-Associated Legionella

(2015) Sílvia Cervero-Aragó et al.   PLoS One

First Evidence of Amoebae–Mycobacteria Association in Drinking Water Network

(2014) Vincent Delafont et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

(2014) Igor Y Oshkin et al.   ISME Journal

The Bacterial Phosphoenolpyruvate:Carbohydrate Phosphotransferase System: Regulation by Protein Phosphorylation and Phosphorylation-Dependent Protein-Protein Interactions

(2014) Josef Deutscher et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Spatial-Temporal Survey and Occupancy-Abundance Modeling To Predict Bacterial Community Dynamics in the Drinking Water Microbiome

(2014) A. J. Pinto et al.   mBio

Nutrient salvaging and metabolism by the intracellular pathogen Legionella pneumophila

(2014) Maris V. Fonseca et al.   Frontiers in Cellular and Infection Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

(2013) Theodore M Flynn et al.   BMC MICROBIOLOGY

Eukaryotic diversity in premise drinking water using 18S rDNA sequencing: implications for health risks

(2013) Helen Y. Buse et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Diversity and dynamics of microbial communities at each step of treatment plant for potable water generation

(2013) Wenfang Lin et al.   WATER RESEARCH

Analysis of the bacterial communities associated with different drinking water treatment processes

(2013) Dan-Ning Zeng et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment

(2013) Yuanqing Chao et al.   Scientific Reports

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

Is metagenomics resolving identification of functions in microbial communities?

(2013) Ludmila Chistoserdova   Microbial Biotechnology

Metagenomic Analyses of Drinking Water Receiving Different Disinfection Treatments

(2012) Vicente Gomez-Alvarez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Community Dynamics of an Urban Drinking Water Distribution System Subjected to Phases of Chloramination and Chlorination Treatments

(2012) Chiachi Hwang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Community Structure in the Drinking Water Microbiome Is Governed by Filtration Processes

(2012) Ameet J. Pinto et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecological and evolutive implications of bacterial defences against predators

(2011) Alexandre Jousset   ENVIRONMENTAL MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Caenorhabditis elegans as an Alternative Model Host for Legionella pneumophila, and Protective Effects of Bifidobacterium infantis

(2010) T. Komura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing Analysis of Bacterial Biofilm Communities in Water Meters of a Drinking Water Distribution System

(2010) P.-Y. Hong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Protists have divergent effects on bacterial diversity along a productivity gradient

(2010) T. Bell et al.   Biology Letters

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Free-Living Protozoa in Two Unchlorinated Drinking Water Supplies, Identified by Phylogenic Analysis of 18S rRNA Gene Sequences

(2009) R. M. Valster et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The Exiguobacterium genus: biodiversity and biogeography

(2009) Tatiana A. Vishnivetskaya et al.   EXTREMOPHILES

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS