Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

(2014) David A. C. Beck et al.   PLoS One

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico

(2013) Eric A. Dubinsky et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

(2013) Adam R Rivers et al.   ISME Journal

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

(2013) M. G. Kalyuzhnaya et al.   Nature Communications

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between theMethylococcaceaeand theMethylophilaceae

(2013) David A.C. Beck et al.   PeerJ

Selection of associated heterotrophs by methane-oxidizing bacteria at different copper concentrations

(2012) David van der Ha et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

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Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing

(2012) Ruo He et al.   ENVIRONMENTAL MICROBIOLOGY

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil

(2012) Andreas Reim et al.   ISME Journal

Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology

(2011) Ludmila Chistoserdova   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96

(2011) Mette M. Svenning et al.   JOURNAL OF BACTERIOLOGY

Production and consumption of methane in freshwater lake ecosystems

(2011) Guillaume Borrel et al.   RESEARCH IN MICROBIOLOGY

Identification of Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine Hydrocarbon Seeps by Stable Isotope Probing

(2010) M. C. Redmond et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs

(2010) Patricia L. Tavormina et al.   Environmental Microbiology Reports

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

Methylophilaceaelink methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis

(2009) Marina G. Kalyuhznaya et al.   Environmental Microbiology Reports

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway

(2008) Sigmund Jensen et al.   FEMS MICROBIOLOGY ECOLOGY

High-resolution metagenomics targets specific functional types in complex microbial communities

(2008) Marina G Kalyuzhnaya et al.   NATURE BIOTECHNOLOGY