The sequence capture by hybridization: a new approach for revealing the potential of mono-aromatic hydrocarbons bioattenuation in a deep oligotrophic aquifer

Functional Gene Markers for Fumarate-Adding and Dearomatizing Key Enzymes in Anaerobic Aromatic Hydrocarbon Degradation in Terrestrial Environments

(2016) Frederick von Netzer et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms

(2016) Cyrielle Gasc et al.   NUCLEIC ACIDS RESEARCH

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

(2016) Corinne Biderre-Petit et al.   PLoS One

Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor

(2016) William D. Orsi et al.   Environmental Microbiology Reports

New Bio-Indicators for Long Term Natural Attenuation of Monoaromatic Compounds in Deep Terrestrial Aquifers

(2016) Thomas Aüllo et al.   Frontiers in Microbiology

Biodegradation: Updating the Concepts of Control for Microbial Cleanup in Contaminated Aquifers

(2015) Rainer U. Meckenstock et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples

(2015) Boonfei Tan et al.   ISME Journal

Microbial diversity and hydrocarbon depletion in low and high diesel-polluted soil samples from Keller Peninsula, South Shetland Islands

(2014) Juliano C. Cury et al.   ANTARCTIC SCIENCE

Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples

(2014) Claudia Bragalini et al.   DNA RESEARCH

Identification of toluene degraders in a methanogenic enrichment culture

(2014) S. Jane Fowler et al.   FEMS MICROBIOLOGY ECOLOGY

Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria

(2014) Dragana Bozinovski et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Diversity of Benzylsuccinate Synthase-Like (bssA) Genes in Hydrocarbon-Polluted Marine Sediments Suggests Substrate-Dependent Clustering

(2013) Alejandro Acosta-González et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessment of Anaerobic Toluene Biodegradation Activity bybssATranscript/Gene Ratios

(2013) Christina N. Brow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

(2013) J. Denonfoux et al.   DNA RESEARCH

Identification of Desulfosporosinus as toluene-assimilating microorganisms from a methanogenic consortium

(2013) Weimin Sun et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems

(2012) Frederick von Netzer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

KASpOD—a web service for highly specific and explorative oligonucleotide design

(2012) Nicolas Parisot et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Diversity and distribution of sulfate-reducing bacteria in four petroleum reservoirs detected by using 16S rRNA and dsrAB genes

(2012) Jing Guan et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

(2012) Martin Taubert et al.   ISME Journal

Isolation and Characterization of Novel Sulfate-Reducing Bacterium Capable of Anaerobic Degradation of p-Xylene

(2012) Yuriko Higashioka et al.   MICROBES AND ENVIRONMENTS

Diversity of Five Anaerobic Toluene-Degrading Microbial Communities Investigated Using Stable Isotope Probing

(2011) Weimin Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Methanogenic toluene metabolism: community structure and intermediates

(2011) S. Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular diversity and distribution of aromatic hydrocarbon-degrading anaerobes across a landfill leachate plume

(2011) Martijn Staats et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield

(2011) Merja Itävaara et al.   FEMS MICROBIOLOGY ECOLOGY

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP

(2011) Giovanni Pilloni et al.   FEMS MICROBIOLOGY ECOLOGY

The use of nucleic acid based stable isotope probing to identify the microorganisms responsible for anaerobic benzene and toluene biodegradation

(2011) Alison M. Cupples   JOURNAL OF MICROBIOLOGICAL METHODS

Assessing the correlation between anaerobic toluene degradation activity and bssA concentrations in hydrocarbon-contaminated aquifer material

(2010) Sufia K. Kazy et al.   BIODEGRADATION

Anaerobic Biodegradation of BTEX by Original Bacterial Communities from an Underground Gas Storage Aquifer

(2010) Sabrina Berlendis et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

(2010) Christian Winderl et al.   ISME Journal

Anaerobic benzene degradation by Gram-positive sulfate-reducing bacteria

(2009) Nidal Abu Laban et al.   FEMS MICROBIOLOGY ECOLOGY

Enrichment and characterization of  a sulfate-reducing toluene-degrading microbial consortium by combiningin situmicrocosms and stable isotope probing techniques

(2009) Petra Bombach et al.   FEMS MICROBIOLOGY ECOLOGY

Characterization of anaerobic xylene biodegradation by two-dimensional isotope fractionation analysis

(2009) Steffi Herrmann et al.   Environmental Microbiology Reports

Comparative Assessments of Benzene, Toluene, and Xylene Natural Attenuation by Quantitative Polymerase Chain Reaction Analysis of a Catabolic Gene, Signature Metabolites, and Compound-Specific Isotope Analysis

(2008) Harry R. Beller et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial biodiversity in groundwater ecosystems

(2008) C. GRIEBLER et al.   FRESHWATER BIOLOGY

Characterization by culture and molecular analysis of the microbial diversity of a deep subsurface gas storage aquifer

(2008) Odile Basso et al.   RESEARCH IN MICROBIOLOGY

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE