Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome diversity in arbuscular mycorrhizal fungi

(2015) J Peter W Young   CURRENT OPINION IN PLANT BIOLOGY

Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm

(2015) Eva Boon et al.   Genome Biology and Evolution

Homokaryotic vs heterokaryotic mycelium in arbuscular mycorrhizal fungi: different techniques, different results?

(2015) Jeanne Ropars et al.   NEW PHYTOLOGIST

Measuring Meiotic Crossovers via Multi-Locus Genotyping of Single Pollen Grains in Barley

(2015) Steven Dreissig et al.   PLoS One

Intraisolate Mitochondrial Genetic Polymorphism and Gene Variants Coexpression in Arbuscular Mycorrhizal Fungi

(2014) Denis Beaudet et al.   Genome Biology and Evolution

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

(2014) Charles F. A. de Bourcy et al.   PLoS One

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

(2014) Kui Lin et al.   PLoS Genetics

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Mating Type Gene Homologues and Putative Sex Pheromone-Sensing Pathway in Arbuscular Mycorrhizal Fungi, a Presumably Asexual Plant Root Symbiont

(2013) Sébastien Halary et al.   PLoS One

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Searching for clues of sexual reproduction in the genomes of arbuscular mycorrhizal fungi

(2012) Rohan Riley et al.   Fungal Ecology

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Estimation of the Glomus intraradices nuclear DNA content

(2011) Kinga A. Sędzielewska et al.   NEW PHYTOLOGIST

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

The many costs of sex

(2011) Jussi Lehtonen et al.   TRENDS IN ECOLOGY & EVOLUTION

Arbuscular Mycorrhiza: The Challenge to Understand the Genetics of the Fungal Partner

(2010) Ian R. Sanders et al.   Annual Review of Genetics

Phosphate Transporter Genes as Reliable Gene Markers for the Identification and Discrimination of Arbuscular Mycorrhizal Fungi in the GenusGlomus

(2010) Serge Sokolski et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

High-Level Molecular Diversity of Copper-Zinc Superoxide Dismutase Genes among and within Species of Arbuscular Mycorrhizal Fungi

(2009) N. Corradi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The mitochondrial genome sequence of the arbuscular mycorrhizal fungusGlomus intraradicesisolate 494 and implications for the phylogenetic placement ofGlomus

(2009) Jaikoo Lee et al.   NEW PHYTOLOGIST

Changes in arbuscular mycorrhizal fungal phenotypes and genotypes in response to plant species identity and phosphorus concentration

(2009) Martine Ehinger et al.   NEW PHYTOLOGIST

Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs

(2009) S. Kosugi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient Trans-specific Polymorphism at Pheromone Receptor Genes in Basidiomycetes

(2008) B. Devier et al.   GENETICS

Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics

(2008) Daniel Croll et al.   NEW PHYTOLOGIST