Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

(2014) Kui Lin et al.   PLoS Genetics

EGN: a wizard for construction of gene and genome similarity networks

(2013) Sébastien Halary et al.   BMC EVOLUTIONARY BIOLOGY

Sequence Comparative Analysis Using Networks: Software for Evaluating De Novo Transcript Assembly from Next-Generation Sequencing

(2013) Ian Misner et al.   MOLECULAR BIOLOGY AND EVOLUTION

A genomic view of mosaicism and human disease

(2013) Leslie G. Biesecker et al.   NATURE REVIEWS GENETICS

Detection of a transient mitochondrial DNA heteroplasmy in the progeny of crossed genetically divergent isolates of arbuscular mycorrhizal fungi

(2013) Ivan Enrique de la Providencia et al.   NEW PHYTOLOGIST

Allelic Differences within and among Sister Spores of the Arbuscular Mycorrhizal Fungus Glomus etunicatum Suggest Segregation at Sporulation

(2013) Eva Boon et al.   PLoS One

Gene similarity networks provide tools for understanding eukaryote origins and evolution

(2013) D. Alvarez-Ponce et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significant genetic and phenotypic changes arising from clonal growth of a single spore of an arbuscular mycorrhizal fungus over multiple generations

(2012) Martine O. Ehinger et al.   NEW PHYTOLOGIST

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Spore development and nuclear inheritance in arbuscular mycorrhizal fungi

(2011) Julie Marleau et al.   BMC EVOLUTIONARY BIOLOGY

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage

(2011) Sébastien Halary et al.   Genome Biology and Evolution

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Estimation of the Glomus intraradices nuclear DNA content

(2011) Kinga A. Sędzielewska et al.   NEW PHYTOLOGIST

The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

(2011) E. Tisserant et al.   NEW PHYTOLOGIST

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Multinucleate Spores Contribute to Evolutionary Longevity of Asexual Glomeromycota

(2010) Jean‐Luc Jany et al.   AMERICAN NATURALIST

Arbuscular Mycorrhiza: The Challenge to Understand the Genetics of the Fungal Partner

(2010) Ian R. Sanders et al.   Annual Review of Genetics

Does Biology Need an Organism Concept?

(2010) John W. Pepper et al.   BIOLOGICAL REVIEWS

Segregation in a Mycorrhizal Fungus Alters Rice Growth and Symbiosis-Specific Gene Transcription

(2010) Caroline Angelard et al.   CURRENT BIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Intra-isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome

(2010) E. BOON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Impact of multispores in vitro subcultivation of Glomus sp. MUCL 43194 (DAOM 197198) on vegetative compatibility and genetic diversity detected by AFLP

(2010) Antonio Cárdenas-Flores et al.   MYCORRHIZA

Effect of segregation and genetic exchange on arbuscular mycorrhizal fungi in colonization of roots

(2010) Caroline Angelard et al.   NEW PHYTOLOGIST

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

What is an Individual Organism? A Multilevel Selection Perspective

(2010) Henri J. Folse et al.   QUARTERLY REVIEW OF BIOLOGY

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus

(2009) Daniel Croll et al.   BMC EVOLUTIONARY BIOLOGY

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices

(2008) Daniel Croll et al.   NEW PHYTOLOGIST

The long hard road to a completedGlomus intraradicesgenome

(2008) F. Martin et al.   NEW PHYTOLOGIST

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

(2008) Daniel C. Richter et al.   PLoS One