- Home
- Publications
- Publication Search
- Publication Details
Title
Next-Generation Sequencing and Genome Editing in Plant Virology
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 7, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2016-08-26
DOI
10.3389/fmicb.2016.01325
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies
- (2016) Arnaud G. Blouin et al. Molecular Ecology Resources
- Engineering of CRISPR/Cas9-mediated potyvirus resistance in transgene-freeArabidopsisplants
- (2016) Douglas E. Pyott et al. MOLECULAR PLANT PATHOLOGY
- Development of broad virus resistance in non-transgenic cucumber using CRISPR/Cas9 technology
- (2016) Jeyabharathy Chandrasekaran et al. MOLECULAR PLANT PATHOLOGY
- High-Throughput Sequencing Identifies Novel Viruses in Nectarine: Insights to the Etiology of Stem-Pitting Disease
- (2016) D. E. V. Villamor et al. PHYTOPATHOLOGY
- A TILLING approach to generate broad-spectrum resistance to potyviruses in tomato is hampered byeIF4Egene redundancy
- (2016) Camille Gauffier et al. PLANT JOURNAL
- C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
- (2016) Omar O. Abudayyeh et al. SCIENCE
- Identification of Viruses and Viroids by Next-Generation Sequencing and Homology-Dependent and Homology-Independent Algorithms
- (2015) Qingfa Wu et al. Annual Review of Phytopathology
- Dissecting the Molecular Network of Virus-Plant Interactions: The Complex Roles of Host Factors
- (2015) Aiming Wang Annual Review of Phytopathology
- Comparative analysis among the small RNA populations of source, sink and conductive tissues in two different plant-virus pathosystems
- (2015) Mari Herranz et al. BMC GENOMICS
- Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
- (2015) Bernd Zetsche et al. CELL
- Editing plant genomes with CRISPR/Cas9
- (2015) Khaoula Belhaj et al. CURRENT OPINION IN BIOTECHNOLOGY
- In silico prediction and validation of potential gene targets for pospiviroid-derived small RNAs during tomato infection
- (2015) Katia Avina-Padilla et al. GENE
- Identification and characterization of a novel geminivirus with a monopartite genome infecting apple trees
- (2015) Pengbo Liang et al. JOURNAL OF GENERAL VIROLOGY
- Identification and molecular characterization of a novel monopartite geminivirus associated with mulberry mosaic dwarf disease
- (2015) Yuxin Ma et al. JOURNAL OF GENERAL VIROLOGY
- Complete Nucleotide Sequence of Artichoke latent virus Shows it to be a Member of the Genus Macluravirus in the Family Potyviridae
- (2015) S. A. Minutillo et al. PHYTOPATHOLOGY
- Detection of a New Luteovirus in Imported Nectarine Trees: A Case Study to Propose Adoption of Metagenomics in Post-Entry Quarantine
- (2015) Sudeep Bag et al. PHYTOPATHOLOGY
- Plant Virus Metagenomics: Advances in Virus Discovery
- (2015) Marilyn J. Roossinck et al. PHYTOPATHOLOGY
- Small RNA Derived from the Virulence Modulating Region of thePotato spindle tuber viroidSilencescallose synthaseGenes of Tomato Plants
- (2015) Charith Raj Adkar-Purushothama et al. PLANT CELL
- Deep-sequencing revealedCitrus bark cracking viroid(CBCVd) as a highly aggressive pathogen on hop
- (2015) J. Jakse et al. PLANT PATHOLOGY
- Cas9-mediated targeting of viral RNA in eukaryotic cells
- (2015) Aryn A. Price et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Revolution in human evolution
- (2015) A. Gibbons SCIENCE
- Bacterial CRISPR/Cas DNA endonucleases: A revolutionary technology that could dramatically impact viral research and treatment
- (2015) Edward M. Kennedy et al. VIROLOGY
- Viroids, the simplest RNA replicons: How they manipulate their hosts for being propagated and how their hosts react for containing the infection
- (2015) R. Flores et al. VIRUS RESEARCH
- Tsv-N1: A Novel DNA Algal Virus that Infects Tetraselmis striata
- (2015) António Pagarete et al. Viruses-Basel
- Plant Translation Factors and Virus Resistance
- (2015) Hélène Sanfaçon Viruses-Basel
- Can Plant Viruses Cross the Kingdom Border and Be Pathogenic to Humans?
- (2015) Fanny Balique et al. Viruses-Basel
- Nicotiana Small RNA Sequences Support a Host Genome Origin of Cucumber Mosaic Virus Satellite RNA
- (2015) Kiran Zahid et al. PLoS Genetics
- A Novel Route Controlling Begomovirus Resistance by the Messenger RNA Surveillance Factor Pelota
- (2015) Moshe Lapidot et al. PLoS Genetics
- Satellite RNA pathogens of plants: impacts and origins-an RNA silencing perspective
- (2015) Ming-Bo Wang et al. Wiley Interdisciplinary Reviews-RNA
- Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population
- (2015) Walter Pirovano et al. Frontiers in Microbiology
- Metagenomics of plant and fungal viruses reveals an abundance of persistent lifestyles
- (2015) Marilyn J. Roossinck Frontiers in Microbiology
- Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants
- (2015) Chao Zhang et al. Frontiers in Microbiology
- Establishing a CRISPR–Cas-like immune system conferring DNA virus resistance in plants
- (2015) Xiang Ji et al. Nature Plants
- Conferring resistance to geminiviruses with the CRISPR–Cas prokaryotic immune system
- (2015) Nicholas J. Baltes et al. Nature Plants
- Current status of viroid taxonomy
- (2014) F. Di Serio et al. ARCHIVES OF VIROLOGY
- A high-throughput screening strategy for detecting CRISPR-Cas9 induced mutations using next-generation sequencing
- (2014) Charles C Bell et al. BMC GENOMICS
- High-throughput sequencing reveals small RNAs involved in ASGV infection
- (2014) Marike Visser et al. BMC GENOMICS
- Development and Applications of CRISPR-Cas9 for Genome Engineering
- (2014) Patrick D. Hsu et al. CELL
- Library preparation methods for next-generation sequencing: Tone down the bias
- (2014) Erwin L. van Dijk et al. EXPERIMENTAL CELL RESEARCH
- Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease
- (2014) Yan He et al. MOLECULAR PLANT PATHOLOGY
- Programmable RNA recognition and cleavage by CRISPR/Cas9
- (2014) Mitchell R. O’Connell et al. NATURE
- A Eukaryotic Translation Initiation Factor 4E (eIF4E) is Responsible for the “va” Tobacco Recessive Resistance to Potyviruses
- (2014) E. Julio et al. PLANT MOLECULAR BIOLOGY REPORTER
- Deep-Sequencing of the Peach Latent Mosaic Viroid Reveals New Aspects of Population Heterogeneity
- (2014) Jean-Pierre Sehi Glouzon et al. PLoS One
- De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs
- (2014) Jonathan Seguin et al. PLoS One
- Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context
- (2014) Thierry Candresse et al. PLoS One
- Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch
- (2014) Terry Fei Fan Ng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology
- (2014) M. Legendre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice
- (2014) Robert H. Yolken et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The new frontier of genome engineering with CRISPR-Cas9
- (2014) J. A. Doudna et al. SCIENCE
- Development of a virus detection and discovery pipeline using next generation sequencing
- (2014) Thien Ho et al. VIROLOGY
- Analysis of viral (zucchini yellow mosaic virus) genetic diversity during systemic movement through a Cucurbita pepo vine
- (2014) J.P. Dunham et al. VIRUS RESEARCH
- Comparative analysis of virus-specific small RNA profiles of three biologically distinct strains of Potato virus Y in infected potato (Solanum tuberosum) cv. Russet Burbank
- (2014) Khalid Naveed et al. VIRUS RESEARCH
- Complete genome sequences of new divergent potato virus X isolates and discrimination between strains in a mixed infection using small RNAs sequencing approach
- (2014) Denis Kutnjak et al. VIRUS RESEARCH
- Identification and characterization of a viroid resembling apple dimple fruit viroid in fig (Ficus carica L.) by next generation sequencing of small RNAs
- (2014) M. Chiumenti et al. VIRUS RESEARCH
- Historical Perspective, Development and Applications of Next-Generation Sequencing in Plant Virology
- (2014) Marina Barba et al. Viruses-Basel
- A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
- (2014) Oliver Smith et al. Scientific Reports
- Generation of Marker-free Transgenic Plants Concurrently Resistant to a DNA Geminivirus and a RNA Tospovirus
- (2014) Ching-Fu Yang et al. Scientific Reports
- Discovery of Replicating Circular RNAs by RNA-Seq and Computational Algorithms
- (2014) Zhixiang Zhang et al. PLoS Pathogens
- Plant virus metagenomics: what we know and why we need to know more
- (2014) Anthony H. Stobbe et al. Frontiers in Plant Science
- CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea
- (2013) Rotem Sorek et al. Annual Review of Biochemistry
- Characterization of a new apscaviroid from American persimmon
- (2013) Takao Ito et al. ARCHIVES OF VIROLOGY
- Peptide Aptamers That Bind to Geminivirus Replication Proteins Confer a Resistance Phenotype to Tomato Yellow Leaf Curl Virus and Tomato Mottle Virus Infection in Tomato
- (2013) M. I. Reyes et al. JOURNAL OF VIROLOGY
- Geminiviruses: masters at redirecting and reprogramming plant processes
- (2013) Linda Hanley-Bowdoin et al. NATURE REVIEWS MICROBIOLOGY
- Identification of a New Enamovirus Associated with Citrus Vein Enation Disease by Deep Sequencing of Small RNAs
- (2013) Mari Carmen Vives et al. PHYTOPATHOLOGY
- Characterization by Deep Sequencing of DivergentPlum bark necrosis stem pitting-associated virus(PBNSPaV) Isolates and Development of a Broad-Spectrum PBNSPaV Detection Assay
- (2013) Armelle Marais et al. PHYTOPATHOLOGY
- A Leafhopper-Transmissible DNA Virus with Novel Evolutionary Lineage in the Family Geminiviridae Implicated in Grapevine Redleaf Disease by Next-Generation Sequencing
- (2013) Sudarsana Poojari et al. PLoS One
- Differential Expression of Tomato Spotted Wilt Virus-Derived Viral Small RNAs in Infected Commercial and Experimental Host Plants
- (2013) Neena Mitter et al. PLoS One
- Discovering Host Genes Involved in the Infection by the Tomato Yellow Leaf Curl Virus Complex and in the Establishment of Resistance to the Virus Using Tobacco Rattle Virus-based Post Transcriptional Gene Silencing
- (2013) Henryk Czosnek et al. Viruses-Basel
- Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
- (2013) Michael D. Martin et al. Nature Communications
- Ancient RNA? RT-PCR of 50-year-old RNA identifies peach latent mosaic viroid
- (2012) Paul L. Guy ARCHIVES OF VIROLOGY
- Viroids: How to infect a host and cause disease without encoding proteins
- (2012) Beatriz Navarro et al. BIOCHIMIE
- Inhibition of Binding of Tomato Yellow Leaf Curl Virus Rep to its Replication Origin by Artificial Zinc-Finger Protein
- (2012) Tomoaki Mori et al. MOLECULAR BIOTECHNOLOGY
- CRISPR Immunity Relies on the Consecutive Binding and Degradation of Negatively Supercoiled Invader DNA by Cascade and Cas3
- (2012) Edze R. Westra et al. MOLECULAR CELL
- Melon RNA interference (RNAi) lines silenced for Cm-eIF4E show broad virus resistance
- (2012) ANA M. RODRÍGUEZ-HERNÁNDEZ et al. MOLECULAR PLANT PATHOLOGY
- RNA Silencing and Plant Viral Diseases
- (2012) Ming-Bo Wang et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis
- (2012) Rajendran Rajeswaran et al. NUCLEIC ACIDS RESEARCH
- Identification and Characterization of Citrus yellow vein clearing virus, A Putative New Member of the Genus Mandarivirus
- (2012) G. Loconsole et al. PHYTOPATHOLOGY
- A Novel Virus of the Genus Cilevirus Causing Symptoms Similar to Citrus Leprosis
- (2012) Avijit Roy et al. PHYTOPATHOLOGY
- Detection of Viruses in Sweetpotato from Honduras and Guatemala Augmented by Deep-Sequencing of Small-RNAs
- (2012) M. Kashif et al. PLANT DISEASE
- Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing
- (2012) Beatriz Navarro et al. PLANT JOURNAL
- Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation
- (2012) Rugang Li et al. PLoS One
- Population Diversity of Rice Stripe Virus-Derived siRNAs in Three Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax striatellus
- (2012) Yi Xu et al. PLoS One
- Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
- (2012) G. Gasiunas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm
- (2012) Q. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Viroid-specific small RNA in plant disease
- (2012) Christian Hammann et al. RNA Biology
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae
- (2012) Giuliana Loconsole et al. VIROLOGY
- Primary and Secondary siRNAs in Geminivirus-induced Gene Silencing
- (2012) Michael Aregger et al. PLoS Pathogens
- CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
- (2011) Devaki Bhaya et al. Annual Review of Genetics
- Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses
- (2011) Charles Hagen et al. ARCHIVES OF VIROLOGY
- Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus
- (2011) Tatiane F Silva et al. BMC MOLECULAR BIOLOGY
- The dependence of viral RNA replication on co-opted host factors
- (2011) Peter D. Nagy et al. NATURE REVIEWS MICROBIOLOGY
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense
- (2011) Todd Blevins et al. NUCLEIC ACIDS RESEARCH
- Association of a Novel DNA Virus with the Grapevine Vein-Clearing and Vine Decline Syndrome
- (2011) Yu Zhang et al. PHYTOPATHOLOGY
- Citrus tristeza virus infection induces the accumulation of viral small RNAs (21–24-nt) mapping preferentially at the 3′-terminal region of the genomic RNA and affects the host small RNA profile
- (2011) Susana Ruiz-Ruiz et al. PLANT MOLECULAR BIOLOGY
- Characterization of Small Interfering RNAs Derived from the Geminivirus/Betasatellite Complex Using Deep Sequencing
- (2011) Xiuling Yang et al. PLoS One
- Specific Impact of Tobamovirus Infection on the Arabidopsis Small RNA Profile
- (2011) Quanan Hu et al. PLoS One
- Accumulation of Potato spindle tuber viroid-specific small RNAs is accompanied by specific changes in gene expression in two tomato cultivars
- (2011) Ying Wang et al. VIROLOGY
- A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris
- (2011) Annalisa Giampetruzzi et al. VIRUS RESEARCH
- Viral Small Interfering RNAs Target Host Genes to Mediate Disease Symptoms in Plants
- (2011) Neil A. Smith et al. PLoS Pathogens
- A Viral Satellite RNA Induces Yellow Symptoms on Tobacco by Targeting a Gene Involved in Chlorophyll Biosynthesis using the RNA Silencing Machinery
- (2011) Hanako Shimura et al. PLoS Pathogens
- Characterization of siRNAs derived from rice stripe virus in infected rice plants by deep sequencing
- (2010) Fei Yan et al. ARCHIVES OF VIROLOGY
- Characterization of plant miRNAs and small RNAs derived from potato spindle tuber viroid (PSTVd) in infected tomato
- (2010) Natalie Diermann et al. BIOLOGICAL CHEMISTRY
- In-depth sequencing of the siRNAs associated with peach latent mosaic viroid infection
- (2010) François Bolduc et al. BMC MOLECULAR BIOLOGY
- Detection of Cereal yellow dwarf virus using small interfering RNAs and enhanced infection rate with Cocksfoot streak virus in wild cocksfoot grass (Dactylis glomerata)
- (2010) Denise W. Pallett et al. JOURNAL OF VIROLOGICAL METHODS
- High-throughput sequencing ofHop stunt viroid-derived small RNAs from cucumber leaves and phloem
- (2010) GERMAN MARTINEZ et al. MOLECULAR PLANT PATHOLOGY
- Pepper Mild Mottle Virus, a Plant Virus Associated with Specific Immune Responses, Fever, Abdominal Pains, and Pruritus in Humans
- (2010) Philippe Colson et al. PLoS One
- Global Analyses of Small Interfering RNAs Derived from Bamboo mosaic virus and Its Associated Satellite RNAs in Different Plants
- (2010) Kuan-Yu Lin et al. PLoS One
- Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine
- (2010) Vitantonio Pantaleo et al. VIROLOGY
- Structural and Functional Analysis of Viral siRNAs
- (2010) Gyorgy Szittya et al. PLoS Pathogens
- RNA-Dependent RNA Polymerase 6 Delays Accumulation and Precludes Meristem Invasion of a Viroid That Replicates in the Nucleus
- (2009) F. Di Serio et al. JOURNAL OF VIROLOGY
- Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology
- (2009) IAN P. ADAMS et al. MOLECULAR PLANT PATHOLOGY
- First transgenic geminivirus-resistant plant in the field
- (2009) Francisco J L Aragão et al. NATURE BIOTECHNOLOGY
- Small RNA Deep Sequencing Reveals Role for Arabidopsis thaliana RNA-Dependent RNA Polymerases in Viral siRNA Biogenesis
- (2009) Xiaopeng Qi et al. PLoS One
- Deep Sequencing of the Small RNAs Derived from Two Symptomatic Variants of a Chloroplastic Viroid: Implications for Their Genesis and for Pathogenesis
- (2009) Francesco Di Serio et al. PLoS One
- Deep Sequencing of Viroid-Derived Small RNAs from Grapevine Provides New Insights on the Role of RNA Silencing in Plant-Viroid Interaction
- (2009) Beatriz Navarro et al. PLoS One
- Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus
- (2009) M. Al Rwahnih et al. VIROLOGY
- Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
- (2009) Jan F. Kreuze et al. VIROLOGY
- Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
- (2009) Livia Donaire et al. VIROLOGY
- The Prehistory of Potyviruses: Their Initial Radiation Was during the Dawn of Agriculture
- (2008) Adrian J. Gibbs et al. PLoS One
- Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
- (2008) S. J. J. Brouns et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now