Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context

A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)

(2013) Brejnev Muhire et al.   ARCHIVES OF VIROLOGY

From deep sequencing to viral tagging: Recent advances in viral metagenomics

(2013) Dana Willner et al.   BIOESSAYS

Sequence Recombination and Conservation of Varroa destructor Virus-1 and Deformed Wing Virus in Field Collected Honey Bees (Apis mellifera)

(2013) Hui Wang et al.   PLoS One

Evidence that dicot-infecting mastreviruses are particularly prone to inter-species recombination and have likely been circulating in Australia for longer than in Africa and the Middle East

(2013) Simona Kraberger et al.   VIROLOGY

Novel myco-like DNA viruses discovered in the faecal matter of various animals

(2013) Alyssa Sikorski et al.   VIRUS RESEARCH

Ultra-Deep Sequencing of Intra-host Rabies Virus Populations during Cross-species Transmission

(2013) Monica K. Borucki et al.   PLoS Neglected Tropical Diseases

Deep sequencing reveals persistence of intra- and inter-host genetic diversity in natural and greenhouse populations of zucchini yellow mosaic virus

(2012) H. E. Simmons et al.   JOURNAL OF GENERAL VIROLOGY

Detection of Viruses in Sweetpotato from Honduras and Guatemala Augmented by Deep-Sequencing of Small-RNAs

(2012) M. Kashif et al.   PLANT DISEASE

Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation

(2012) Rugang Li et al.   PLoS One

Australian monocot-infecting mastrevirus diversity rivals that in Africa

(2012) Simona Kraberger et al.   VIRUS RESEARCH

Discovery of a novel mastrevirus and alphasatellite-like circular DNA in dragonflies (Epiprocta) from Puerto Rico

(2012) Karyna Rosario et al.   VIRUS RESEARCH

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments

(2011) J. Y. Semegni et al.   BIOINFORMATICS

The good viruses: viral mutualistic symbioses

(2011) Marilyn J. Roossinck   NATURE REVIEWS MICROBIOLOGY

From orphan virus to pathogen: the path to the clinical lab

(2011) Linlin Li et al.   Current Opinion in Virology

Exploring the viral world through metagenomics

(2011) Karyna Rosario et al.   Current Opinion in Virology

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Sugarcane yellow leaf virus introduction and spread in Hawaiian sugarcane industry: Retrospective epidemiological study of an unnoticed, mostly asymptomatic plant disease

(2010) Ewald Komor et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Microbe Hunting

(2010) W. I. Lipkin   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology

(2010) MARILYN J. ROOSSINCK et al.   MOLECULAR ECOLOGY

High-throughput sequencing ofHop stunt viroid-derived small RNAs from cucumber leaves and phloem

(2010) GERMAN MARTINEZ et al.   MOLECULAR PLANT PATHOLOGY

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

(2009) M. Al Rwahnih et al.   VIROLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes

(2009) Livia Donaire et al.   VIROLOGY

Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography

(2009) Arvind Varsani et al.   Virology Journal

Plant virus emergence and evolution: Origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control

(2009) Roger A.C. Jones   VIRUS RESEARCH

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya

(2008) Ulrich Melcher et al.   JOURNAL OF VIROLOGICAL METHODS

Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses

(2008) M. Davis et al.   JOURNAL OF VIROLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

Rapid Identification of Known and New RNA Viruses from Animal Tissues

(2008) Joseph G. Victoria et al.   PLoS Pathogens