Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Biogenesis, Function, and Applications of Virus-Derived Small RNAs in Plants
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 6, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2015-11-09
DOI
10.3389/fmicb.2015.01237
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Deep sequencing and analysis of small RNAs in sweet orange grafted on sour orange infected with two citrus tristeza virus isolates prevalent in Sicily
- (2015) Grazia Licciardello et al. ARCHIVES OF VIROLOGY
- LayerCake: a tool for the visual comparison of viral deep sequencing data
- (2015) Michael Correll et al. BIOINFORMATICS
- Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum
- (2015) Ofer Isakov et al. BIOINFORMATICS
- ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering
- (2015) Bie Verbist et al. BMC BIOINFORMATICS
- Small RNAs — the secret agents in the plant–pathogen interactions
- (2015) Arne Weiberg et al. CURRENT OPINION IN PLANT BIOLOGY
- Antiviral roles of plant ARGONAUTES
- (2015) Alberto Carbonell et al. CURRENT OPINION IN PLANT BIOLOGY
- MicroRNA: a new target for improving plant tolerance to abiotic stress
- (2015) Baohong Zhang JOURNAL OF EXPERIMENTAL BOTANY
- Deep Sequencing of Virus-Derived Small Interfering RNAs and RNA from Viral Particles Shows Highly Similar Mutational Landscapes of a Plant Virus Population
- (2015) Denis Kutnjak et al. JOURNAL OF VIROLOGY
- In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs
- (2015) Angel Emilio Martínez de Alba et al. NUCLEIC ACIDS RESEARCH
- Functional and Genetic Analysis Identify a Role for Arabidopsis ARGONAUTE5 in Antiviral RNA Silencing
- (2015) Chantal Brosseau et al. PLANT CELL
- Small RNA Derived from the Virulence Modulating Region of thePotato spindle tuber viroidSilencescallose synthaseGenes of Tomato Plants
- (2015) Charith Raj Adkar-Purushothama et al. PLANT CELL
- Transgenic down-regulation of ARGONAUTE2 expression in Nicotiana benthamiana interferes with several layers of antiviral defenses
- (2015) Denis Odokonyero et al. VIROLOGY
- viral silencing suppressors: Tools forged to fine-tune host-pathogen coexistence
- (2015) Tibor Csorba et al. VIROLOGY
- Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations
- (2015) Aurélien Chateigner et al. Viruses-Basel
- OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus
- (2015) Wei Hong et al. Scientific Reports
- Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection
- (2015) Hernan Garcia-Ruiz et al. PLoS Pathogens
- Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA
- (2015) Jianguo Wu et al. eLife
- Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population
- (2015) Walter Pirovano et al. Frontiers in Microbiology
- Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling
- (2014) Pavel Skums et al. BIOINFORMATICS
- High-throughput sequencing reveals small RNAs involved in ASGV infection
- (2014) Marike Visser et al. BMC GENOMICS
- microRNA biogenesis, degradation and activity in plants
- (2014) Meng Xie et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Different roles for RNA silencing and RNA processing components in virus recovery and virus-induced gene silencing in plants
- (2014) Xiaofang Ma et al. JOURNAL OF EXPERIMENTAL BOTANY
- Application of RNA interference methodology to investigate and develop SCMV resistance in maize
- (2014) DEFANG GAN et al. JOURNAL OF GENETICS
- Analysis of the Evolution and Structure of a Complex Intrahost Viral Population in Chronic Hepatitis C Virus Mapped by Ultradeep Pyrosequencing
- (2014) B. A. Palmer et al. JOURNAL OF VIROLOGY
- Tomato ringspot virus Coat Protein Binds to ARGONAUTE 1 and Suppresses the Translation Repression of a Reporter Gene
- (2014) Rajita A. Karran et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Small regulatory RNAs and the fine-tuning of plant-bacteria interactions
- (2014) Lamia Harfouche et al. NEW PHYTOLOGIST
- Suppress to Survive—Implication of Plant Viruses in PTGS
- (2014) Przemysław Wieczorek et al. PLANT MOLECULAR BIOLOGY REPORTER
- De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs
- (2014) Jonathan Seguin et al. PLoS One
- Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis
- (2014) Mengji Cao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Temperature-dependent symptom recovery in Nicotiana benthamiana plants infected with tomato ringspot virus is associated with reduced translation of viral RNA2 and requires ARGONAUTE 1
- (2014) Basudev Ghoshal et al. VIROLOGY
- Crop immunity against viruses: outcomes and future challenges
- (2014) Valérie Nicaise Frontiers in Plant Science
- Plant virus metagenomics: what we know and why we need to know more
- (2014) Anthony H. Stobbe et al. Frontiers in Plant Science
- Classification and Comparison of Small RNAs from Plants
- (2013) Michael J. Axtell Annual Review of Plant Biology
- Gene silencing in plants: A diversity of pathways
- (2013) Angel Emilio Martínez de Alba et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- The RYMV-Encoded Viral Suppressor of RNA Silencing P1 Is a Zinc-Binding Protein with Redox-Dependent Flexibility
- (2013) François-Xavier Gillet et al. JOURNAL OF MOLECULAR BIOLOGY
- Arabidopsis Double-Stranded RNA Binding Protein DRB3 Participates in Methylation-Mediated Defense against Geminiviruses
- (2013) P. Raja et al. JOURNAL OF VIROLOGY
- Rice yellow stunt rhabdovirusProtein 6 Suppresses Systemic RNA Silencing by Blocking RDR6-Mediated Secondary siRNA Synthesis
- (2013) Hongyan Guo et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system
- (2013) Jana Schuck et al. NUCLEIC ACIDS RESEARCH
- Identification of a New Enamovirus Associated with Citrus Vein Enation Disease by Deep Sequencing of Small RNAs
- (2013) Mari Carmen Vives et al. PHYTOPATHOLOGY
- Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures
- (2013) Christian Poulsen et al. PLANT CELL
- Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches
- (2013) Yong-Fang Li et al. PLANT SCIENCE
- Temperature-Dependent Survival of Turnip Crinkle Virus-Infected Arabidopsis Plants Relies on an RNA Silencing-Based Defense That Requires DCL2, AGO2, and HEN1
- (2012) X. Zhang et al. JOURNAL OF VIROLOGY
- Genome-wide identification of viral and host transcripts targeted by viral siRNAs inVitis vinifera
- (2012) Laura Miozzi et al. MOLECULAR PLANT PATHOLOGY
- Strong Resistance AgainstRice grassy stunt virusIs Induced in Transgenic Rice Plants Expressing Double-Stranded RNA of the Viral Genes for Nucleocapsid or Movement Proteins as Targets for RNA Interference
- (2012) Takumi Shimizu et al. PHYTOPATHOLOGY
- Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants
- (2012) A. Carbonell et al. PLANT CELL
- Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing
- (2012) Beatriz Navarro et al. PLANT JOURNAL
- C2-mediated decrease in DNA methylation, accumulation of siRNAs, and increase in expression for genes involved in defense pathways in plants infected with beet severe curly top virus
- (2012) Li-Ping Yang et al. PLANT JOURNAL
- Population Diversity of Rice Stripe Virus-Derived siRNAs in Three Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax striatellus
- (2012) Yi Xu et al. PLoS One
- Primary and Secondary siRNAs in Geminivirus-induced Gene Silencing
- (2012) Michael Aregger et al. PLoS Pathogens
- Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants
- (2011) Taichiro Iki et al. EMBO JOURNAL
- Binding of the Cyclophilin 40 Ortholog SQUINT to Hsp90 Protein Is Required for SQUINT Function inArabidopsis
- (2011) Keith W. Earley et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Hairpin RNA derived from the gene for Pns9, a viroplasm matrix protein of Rice gall dwarf virus, confers strong resistance to virus infection in transgenic rice plants
- (2011) Takumi Shimizu et al. JOURNAL OF BIOTECHNOLOGY
- Satellite RNA-Derived Small Interfering RNA satsiR-12 Targeting the 3' Untranslated Region of Cucumber Mosaic Virus Triggers Viral RNAs for Degradation
- (2011) H. Zhu et al. JOURNAL OF VIROLOGY
- p2 of Rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor
- (2011) ZHENGUO DU et al. MOLECULAR PLANT PATHOLOGY
- Mutations in the Antiviral RNAi Defense Pathway Modify Brome mosaic virus RNA Recombinant Profiles
- (2011) Aleksandra Dzianott et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Suppression of NS3 and MP is important for the stable inheritance of RNAi-mediated Rice Stripe Virus (RSV) resistance obtained by targeting the fully complementary RSV-CP gene
- (2011) Hyang-Mi Park et al. MOLECULES AND CELLS
- The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana
- (2011) Xian-Bing Wang et al. PLANT CELL
- Citrus tristeza virus infection induces the accumulation of viral small RNAs (21–24-nt) mapping preferentially at the 3′-terminal region of the genomic RNA and affects the host small RNA profile
- (2011) Susana Ruiz-Ruiz et al. PLANT MOLECULAR BIOLOGY
- Identification of an ARGONAUTE for Antiviral RNA Silencing in Nicotiana benthamiana
- (2011) H. B. Scholthof et al. PLANT PHYSIOLOGY
- An Antiviral Defense Role of AGO2 in Plants
- (2011) Jagger J. W. Harvey et al. PLoS One
- Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis
- (2011) L. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Virus-derived transgenes expressing hairpin RNA give immunity to Tobacco mosaic virus and Cucumber mosaic virus
- (2011) Qiong Hu et al. Virology Journal
- RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus
- (2011) Lin Jiang et al. VIRUS RESEARCH
- Ultra-deep sequencing for the analysis of viral populations
- (2011) Niko Beerenwinkel et al. Current Opinion in Virology
- Viral Infection Induces Expression of Novel Phased MicroRNAs from Conserved Cellular MicroRNA Precursors
- (2011) Peng Du et al. PLoS Pathogens
- A Viral Satellite RNA Induces Yellow Symptoms on Tobacco by Targeting a Gene Involved in Chlorophyll Biosynthesis using the RNA Silencing Machinery
- (2011) Hanako Shimura et al. PLoS Pathogens
- Engineering Pathogen Resistance in Crop Plants: Current Trends and Future Prospects
- (2010) David B. Collinge et al. Annual Review of Phytopathology
- Multiple Functions of Rice Dwarf Phytoreovirus Pns10 in Suppressing Systemic RNA Silencing
- (2010) B. Ren et al. JOURNAL OF VIROLOGY
- In Vitro Assembly of Plant RNA-Induced Silencing Complexes Facilitated by Molecular Chaperone HSP90
- (2010) Taichiro Iki et al. MOLECULAR CELL
- Form, Function, and Regulation of ARGONAUTE Proteins
- (2010) Allison Mallory et al. PLANT CELL
- Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection
- (2010) H. Garcia-Ruiz et al. PLANT CELL
- Structural and Functional Analysis of Viral siRNAs
- (2010) Gyorgy Szittya et al. PLoS Pathogens
- Analysis of an autoproteolytic activity of rice yellow mottle virus silencing suppressor P1
- (2009) Isabel Weinheimer et al. BIOLOGICAL CHEMISTRY
- Studies of a viral suppressor of RNA silencing p19-CFP fusion protein: A FRET-based probe for sensing double-stranded fluorophore tagged small RNAs
- (2009) Roger Koukiekolo et al. BIOPHYSICAL CHEMISTRY
- dsRNA with 5′ overhangs contributes to endogenous and antiviral RNA silencing pathways in plants
- (2009) Ryuya Fukunaga et al. EMBO JOURNAL
- ARGONAUTE 1 homeostasis invokes the coordinate action of the microRNA and siRNA pathways
- (2009) Allison C Mallory et al. EMBO REPORTS
- SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies
- (2009) Naoyoshi Kumakura et al. FEBS LETTERS
- Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications and possible losses before and after the divergence of major eukaryotic groups
- (2009) Jie Zong et al. GENE
- Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus
- (2009) Syunichi Urayama et al. PLANT AND CELL PHYSIOLOGY
- The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing
- (2009) Séverine Lacombe et al. PLANT JOURNAL
- Small RNA Deep Sequencing Reveals Role for Arabidopsis thaliana RNA-Dependent RNA Polymerases in Viral siRNA Biogenesis
- (2009) Xiaopeng Qi et al. PLoS One
- RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
- (2009) X.-B. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Elimination of antiviral defense by viral RNase III
- (2009) W. J. Cuellar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization and subcellular localization of an RNA silencing suppressor encoded by Rice stripe tenuivirus
- (2009) Ruyi Xiong et al. VIROLOGY
- Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
- (2009) Livia Donaire et al. VIROLOGY
- Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome
- (2008) Charles Addo-Quaye et al. CURRENT BIOLOGY
- Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
- (2008) B. Ben Amor et al. GENOME RESEARCH
- Structural and Genetic Requirements for the Biogenesis of Tobacco Rattle Virus-Derived Small Interfering RNAs
- (2008) L. Donaire et al. JOURNAL OF VIROLOGY
- Viral Genome Methylation as an Epigenetic Defense against Geminiviruses
- (2008) P. Raja et al. JOURNAL OF VIROLOGY
- Silencing by RNAi of the gene for Pns12, a viroplasm matrix protein ofRice dwarf virus, results in strong resistance of transgenic rice plants to the virus
- (2008) Takumi Shimizu et al. PLANT BIOTECHNOLOGY JOURNAL
- Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1
- (2008) F. Qu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Use, tolerance and avoidance of amplified RNA silencing by plants
- (2008) Olivier Voinnet TRENDS IN PLANT SCIENCE
- Plant ARGONAUTES
- (2008) Hervé Vaucheret TRENDS IN PLANT SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search