Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Enzymes involved in the anaerobic oxidation of n-alkanes: from methane to long-chain paraffins

(2013) Amy V. Callaghan   Frontiers in Microbiology

Microbial d-xylonate production

(2012) Mervi H. Toivari et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Software tools for identification, visualization and analysis of protein tunnels and channels

(2012) Jan Brezovsky et al.   BIOTECHNOLOGY ADVANCES

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

(2012) Eva Chovancova et al.   PLoS Computational Biology

Stereochemical Investigations Reveal the Mechanism of the Bacterial Activation of n-Alkanes without Oxygen

(2011) René Jarling et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus

(2011) Dawn E. Holmes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogeny and evolution of the Archaea: one hundred genomes later

(2011) Celine Brochier-Armanet et al.   CURRENT OPINION IN MICROBIOLOGY

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation

(2011) A. V. Callaghan et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Oxidation of Fatty Acids and Alkenes by the Hyperthermophilic Sulfate-Reducing Archaeon Archaeoglobus fulgidus

(2010) N. Khelifi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation

(2010) Johannes Zedelius et al.   Environmental Microbiology Reports

Metabolic Versatility and Indigenous Origin of the Archaeon Thermococcus sibiricus, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis

(2009) A. V. Mardanov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Archaeoglobus fulgidusandThermotoga elfii, Thermophilic Isolates from Deep Geothermal Water of the Paris Basin

(2009) Marie-Laure Fardeau et al.   GEOMICROBIOLOGY JOURNAL

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hydrocarbons and oxidized organic compounds in hydrothermal fluids from Rainbow and Lost City ultramafic-hosted vents

(2008) C. Konn et al.   CHEMICAL GEOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metabolism of n-alkanes and n-alkenes by anaerobic bacteria: A summary

(2008) Vincent Grossi et al.   ORGANIC GEOCHEMISTRY

HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures

(2008) Bosco K Ho et al.   BMC STRUCTURAL BIOLOGY

Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes

(2007) Amy V. Callaghan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1

(2007) Olav Grundmann et al.   ENVIRONMENTAL MICROBIOLOGY