Spatial and Temporal Dynamics of Pacific Oyster Hemolymph Microbiota across Multiple Scales

The role of tissue-specific microbiota in initial establishment success of Pacific oysters

(2016) Ana Lokmer et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

(2016) Bettina Glasl et al.   ISME Journal

Clearance rate regulation in mussels: Adding the effect of seston level to a model of internal state-based regulation

(2016) Marcel Fréchette et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea

(2016) Maren Ziegler et al.   MARINE POLLUTION BULLETIN

Resistant Microbial Cooccurrence Patterns Inferred by Network Topology

(2015) Sari Peura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deciphering microbial community robustness through synthetic ecology and molecular systems synecology

(2015) Ben Stenuit et al.   CURRENT OPINION IN BIOTECHNOLOGY

Metagenomics meets time series analysis: unraveling microbial community dynamics

(2015) Karoline Faust et al.   CURRENT OPINION IN MICROBIOLOGY

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance

(2015) Hiromi Kato et al.   DNA RESEARCH

Temporal and spatial influences incur reconfiguration of Arctic heathland soil bacterial community structure

(2015) Richard Hill et al.   ENVIRONMENTAL MICROBIOLOGY

The influence of site and season on the gut and pallial fluid microbial communities of the eastern oyster, Crassostrea virginica (Bivalvia, Ostreidae): community-level physiological profiling and genetic structure

(2015) Melissa L. Pierce et al.   HYDROBIOLOGIA

Microbiota shifts in the surface mucopolysaccharide layer of corals transferred from natural to aquaria settings

(2015) Zoe A. Pratte et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Temporal and spatial variation of the human microbiota during pregnancy

(2015) Daniel B. DiGiulio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptation to enemy shifts: rapid resistance evolution to local Vibrio spp. in invasive Pacific oysters

(2015) C. C. Wendling et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Persistent shifts in Caribbean coral microbiota are linked to the 2010 warm thermal anomaly

(2015) Allison M. Tracy et al.   Environmental Microbiology Reports

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome

(2015) Jun Wang et al.   Nature Communications

Factors influencing disease-induced mortality of Pacific oysters Crassostrea gigas

(2015) B Petton et al.   Aquaculture Environment Interactions

A network-based approach to disturbance transmission through microbial interactions

(2015) Dana E. Hunt et al.   Frontiers in Microbiology

Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor

(2015) Tan T. Nguyen et al.   Frontiers in Microbiology

Spatial variability of microbial assemblages associated with a dominant habitat-forming seaweed

(2015) Alexandra H. Campbell et al.   Frontiers in Microbiology

Crassostrea gigas mortality in France: the usual suspect, a herpes virus, may not be the killer in this polymicrobial opportunistic disease

(2015) Bruno Petton et al.   Frontiers in Microbiology

Variation in Honey Bee Gut Microbial Diversity Affected by Ontogenetic Stage, Age and Geographic Location

(2015) Zuzana Hroncova et al.   PLoS One

Disturbance to conserved bacterial communities in the cold-water gorgonian coralEunicella verrucosa

(2014) Emma Ransome et al.   FEMS MICROBIOLOGY ECOLOGY

Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds

(2014) Gavin Lear et al.   ISME Journal

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)

(2014) Petra Pop Ristova et al.   ISME Journal

Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection

(2014) Ana Lokmer et al.   ISME Journal

Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters

(2014) Astrid Lemire et al.   ISME Journal

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

Temporal dynamics of prokaryotic communities in the marine spongeSarcotragus spinosulus

(2014) Cristiane C. P. Hardoim et al.   MOLECULAR ECOLOGY

Persistence, Seasonal Dynamics and Pathogenic Potential of Vibrio Communities from Pacific Oyster Hemolymph

(2014) Carolin C. Wendling et al.   PLoS One

The Gut of Geographically Disparate Ciona intestinalis Harbors a Core Microbiota

(2014) Larry J. Dishaw et al.   PLoS One

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale

(2014) Thomas S. B. Schmidt et al.   PLoS Computational Biology

Biogeography rather than association with cyanobacteria structures symbiotic microbial communities in the marine sponge Petrosia ficiformis

(2014) Ilia Burgsdorf et al.   Frontiers in Microbiology

Host lifestyle affects human microbiota on daily timescales

(2014) Lawrence A David et al.   GENOME BIOLOGY

Persistence of Vibrio parahaemolyticus in the Pacific Oyster, Crassostrea gigas, Is a Multifactorial Process Involving Pili and Flagella but Not Type III Secretion Systems or Phase Variation

(2013) Alisha M. Aagesen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Noninvasive Analysis of Microbiome Dynamics in the Fruit Fly Drosophila melanogaster

(2013) Christine Fink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The world within: Quantifying the determinants and outcomes of a host's microbiome

(2013) Elizabeth T. Borer et al.   BASIC AND APPLIED ECOLOGY

Disturbance induced decoupling between host genetics and composition of the associated microbiome

(2013) Karl Wegner et al.   BMC MICROBIOLOGY

Specificity and temporal dynamics of complex bacteria–sponge symbiotic interactions

(2013) Johannes R. Björk et al.   ECOLOGY

Changes in the composition and diversity of the bacterial microbiota associated with oysters (Crassostrea corteziensis,Crassostrea gigasandCrassostrea sikamea) during commercial production

(2013) Natalia Trabal Fernández et al.   FEMS MICROBIOLOGY ECOLOGY

Exploring the hologenome concept in marine bivalvia: haemolymph microbiota as a pertinent source of probiotics for aquaculture

(2013) Florie Desriac et al.   FEMS MICROBIOLOGY LETTERS

Antimicrobial peptides in oyster hemolymph: The bacterial connection

(2013) Diane Defer et al.   FISH & SHELLFISH IMMUNOLOGY

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis

(2013) Adam C-N Wong et al.   ISME Journal

The Occurrence of Mycoplasma phocicerebrale, Mycoplasma phocidae, and Mycoplasma phocirhinis in Grey and Common Seals (Halichoerus grypus and Phoca vitulina) in the United Kingdom

(2013) Roger D. Ayling et al.   JOURNAL OF WILDLIFE DISEASES

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The role of biogeography in shaping diversity of the intestinal microbiota in house mice

(2013) Miriam Linnenbrink et al.   MOLECULAR ECOLOGY

Bacterial taxa-area and distance-decay relationships in marine environments

(2013) L. Zinger et al.   MOLECULAR ECOLOGY

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

(2013) Alexander F. Koeppel et al.   NUCLEIC ACIDS RESEARCH

Till Death Do Us Part: Stable Sponge-Bacteria Associations under Thermal and Food Shortage Stresses

(2013) Lucía Pita et al.   PLoS One

Mathematical modeling of primary succession of murine intestinal microbiota

(2013) S. Marino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

(2013) Richard R. Stein et al.   PLoS Computational Biology

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance

(2012) Patrick M. Erwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A hemocyte gene expression signature correlated with predictive capacity of oysters to survive Vibrio infections

(2012) Rafael Rosa et al.   BMC GENOMICS

Lineage-dependent ecological coherence in bacteria

(2012) Alexander F. Koeppel et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular analysis of the bacterial communities in the live Pacific oyster (Crassostrea gigas) and the influence of postharvest temperature on its structure

(2012) J. Fernandez-Piquer et al.   JOURNAL OF APPLIED MICROBIOLOGY

Molecular Analysis of Bacterial Microbiota Associated with Oysters (Crassostrea gigas and Crassostrea corteziensis) in Different Growth Phases at Two Cultivation Sites

(2012) Natalia Trabal et al.   MICROBIAL ECOLOGY

Geographical and ecological stability of the symbiotic mid-gut microbiota in European firebugs,Pyrrhocoris apterus(Hemiptera, Pyrrhocoridae)

(2012) Sailendharan Sudakaran et al.   MOLECULAR ECOLOGY

Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography

(2012) CALEB D. PHILLIPS et al.   MOLECULAR ECOLOGY

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Effects of Disturbance Intensity and Frequency on Bacterial Community Composition and Function

(2012) Mercè Berga et al.   PLoS One

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

(2012) Gary M. King et al.   PLoS One

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Linking metacommunity theory and symbiont evolutionary ecology

(2012) Joseph R. Mihaljevic   TRENDS IN ECOLOGY & EVOLUTION

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Carbon, Metals, and Grain Size Correlate with Bacterial Community Structure in Sediments of a High Arsenic Aquifer

(2012) Teresa M. Legg et al.   Frontiers in Microbiology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea

(2011) Dror Zurel et al.   ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

Diversity, Geographic Distribution, and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite, Dermanyssus gallinae

(2011) Claire Valiente Moro et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Invasion genetics of Pacific oyster Crassostrea gigas shaped by aquaculture stocking practices

(2011) Jenny Moehler et al.   JOURNAL OF SEA RESEARCH

Spirochetes in Crystalline Styles of Marine Bivalves: Group-Specific PCR Detection and 16S rRNA Sequence Analysis

(2011) Gunnar Husmann et al.   JOURNAL OF SHELLFISH RESEARCH

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Metapopulation structure of Vibrionaceae among coastal marine invertebrates

(2010) Sarah P. Preheim et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity of field-caught mosquitoes, Aedes albopictus and Aedes aegypti, from different geographic regions of Madagascar

(2010) Karima Zouache et al.   FEMS MICROBIOLOGY ECOLOGY

Experimental tests of the bacterial distance–decay relationship

(2010) Thomas Bell   ISME Journal

Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

(2010) Angélique Gobet et al.   NUCLEIC ACIDS RESEARCH

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Robustness of the Bacterial Community in the Cabbage White Butterfly Larval Midgut

(2009) Courtney J. Robinson et al.   MICROBIAL ECOLOGY

What drives community dynamics?

(2009) C. M. Mutshinda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Influence of Particle Size on Bacterial Community Structure in Aquatic Sediments as Revealed by 16S rRNA Gene Sequence Analysis

(2008) C. R. Jackson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Host-specificity of environmentally transmitted Mycoplasma-like isopod symbionts

(2008) Sebastian Fraune et al.   ENVIRONMENTAL MICROBIOLOGY

Variability of the water temperature in the western Wadden Sea on tidal to centennial time scales

(2008) Hendrik M. van Aken   JOURNAL OF SEA RESEARCH

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY