Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species

Examining the diversity of microbes in a deep-sea coral community impacted by the Deepwater Horizon oil spill

(2016) R.L. Simister et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes

(2015) Daniel F. R. Cleary et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diversity analysis of diazotrophs associated with corals from Xisha and Sanya, South China Sea

(2015) Qingsong Yang et al.   AQUATIC ECOSYSTEM HEALTH & MANAGEMENT

Evidence for host specificity among dominant bacterial symbionts in temperate gorgonian corals

(2015) Marie La Rivière et al.   CORAL REEFS

Chemotaxis by natural populations of coral reef bacteria

(2015) Jessica Tout et al.   ISME Journal

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Seasonal variation in dinitrogen fixation and oxygen fluxes associated with two dominant zooxanthellate soft corals from the northern Red Sea

(2015) VN Bednarz et al.   MARINE ECOLOGY PROGRESS SERIES

Microbiome structure of the fungid coralCtenactis echinataaligns with environmental differences

(2015) Cornelia Roder et al.   MOLECULAR ECOLOGY

Nitrogen cycling in corals: the key to understanding holobiont functioning?

(2015) Nils Rädecker et al.   TRENDS IN MICROBIOLOGY

Discovery of symbiotic nitrogen fixation and chemoautotrophy in cold-water corals

(2015) Jack J. Middelburg et al.   Scientific Reports

The functional gene composition and metabolic potential of coral-associated microbial communities

(2015) Yanying Zhang et al.   Scientific Reports

Seasonal variation in dinitrogen fixation and oxygen fluxes associated with two dominant zooxanthellate soft corals from the northern Red Sea

(2015) VN Bednarz et al.   MARINE ECOLOGY PROGRESS SERIES

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Identification of Candidate Coral Pathogens on White Band Disease-Infected Staghorn Coral

(2015) Sarah A. Gignoux-Wolfsohn et al.   PLoS One

Phage-bacteria network analysis and its implication for the understanding of coral disease

(2014) Nitzan Soffer et al.   ENVIRONMENTAL MICROBIOLOGY

Disturbance to conserved bacterial communities in the cold-water gorgonian coralEunicella verrucosa

(2014) Emma Ransome et al.   FEMS MICROBIOLOGY ECOLOGY

Identification ofDesulfobacteralesas primary hydrogenotrophs in a complex microbial mat community

(2014) L. C. Burow et al.   Geobiology

Use of RAD sequencing for delimiting species

(2014) E Pante et al.   HEREDITY

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata

(2014) Collin J Closek et al.   ISME Journal

Nitrogen fixation in the mucus of Red Sea corals

(2014) R. Grover et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Ocean acidification rapidly reduces dinitrogen fixation associated with the hermatypic coral Seriatopora hystrix

(2014) N Rädecker et al.   MARINE ECOLOGY PROGRESS SERIES

Benthic N2fixation in coral reefs and the potential effects of human-induced environmental change

(2014) Ulisse Cardini et al.   Ecology and Evolution

Disease dynamics and potential mitigation among restored and wild staghorn coral,Acropora cervicornis

(2014) Margaret W. Miller et al.   PeerJ

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Diversity and antimicrobial potential of culturable heterotrophic bacteria associated with the endemic marine spongeArenosclera brasiliensis

(2014) Cintia P.J. Rua et al.   PeerJ

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diazotrophic diversity in the Caribbean coral, Montastraea cavernosa

(2013) Nathan D. Olson et al.   ARCHIVES OF MICROBIOLOGY

Microbial functional genes associated with coral health and disease

(2013) ZA Pratte   DISEASES OF AQUATIC ORGANISMS

TheMontastraea faveolatamicrobiome: ecological and temporal influences on a Caribbean reef-building coral in decline

(2013) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Major similarities in the bacterial communities associated with lesioned and healthy Fungiidae corals

(2013) Amy Apprill et al.   ENVIRONMENTAL MICROBIOLOGY

Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of theAcropora milleporamicrobiome

(2013) Kimberley A. Lema et al.   ENVIRONMENTAL MICROBIOLOGY

Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters

(2013) Daniel F.R. Cleary et al.   FEMS MICROBIOLOGY ECOLOGY

Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas

(2013) R. E. Pike et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenetically Diverse Denitrifying and Ammonia-Oxidizing Bacteria in Corals Alcyonium gracillimum and Tubastraea coccinea

(2013) Shan Yang et al.   MARINE BIOTECHNOLOGY

Bacterial Communities of the Gorgonian Octocoral Pseudopterogorgia elisabethae

(2013) Hebelin Correa et al.   MICROBIAL ECOLOGY

Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals

(2013) Gizele D. Garcia et al.   MICROBIAL ECOLOGY

Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome

(2013) Cornelia Roder et al.   MOLECULAR ECOLOGY

Transient Shifts in Bacterial Communities Associated with the Temperate Gorgonian Paramuricea clavata in the Northwestern Mediterranean Sea

(2013) Marie La Rivière et al.   PLoS One

16SrDNA Pyrosequencing of the Mediterranean Gorgonian Paramuricea clavata Reveals a Link among Alterations in Bacterial Holobiont Members, Anthropogenic Influence and Disease Outbreaks

(2013) Luigi Vezzulli et al.   PLoS One

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii

(2013) Christian Jessen et al.   PLoS One

Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases

(2013) C. J. Krediet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial communities and species-specific associations with the mucus of Brazilian coral species

(2013) Camila Carlos et al.   Scientific Reports

Corals Form Characteristic Associations with Symbiotic Nitrogen-Fixing Bacteria

(2012) Kimberley A. Lema et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

(2012) On On Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ciliate and bacterial communities associated with White Syndrome and Brown Band Disease in reef-building corals

(2012) Michael Sweet et al.   ENVIRONMENTAL MICROBIOLOGY

Endozoicomonas numazuensis sp. nov., a gammaproteobacterium isolated from marine sponges, and emended description of the genus Endozoicomonas Kurahashi and Yokota 2007

(2012) M. Nishijima et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps

(2012) Ulrike Jaekel et al.   ISME Journal

Changes in coral microbial communities in response to a natural pH gradient

(2012) Dalit Meron et al.   ISME Journal

Bacteria of the genus Endozoicomonas dominate the microbiome of the Mediterranean gorgonian coral Eunicella cavolini

(2012) T Bayer et al.   MARINE ECOLOGY PROGRESS SERIES

Microbial diversity of Alcyonium digitatum

(2012) Cecilia Alsmark et al.   PHYTOCHEMISTRY REVIEWS

Reconstruction of Extracellular Respiratory Pathways for Iron(III) Reduction in Shewanella Oneidensis Strain MR-1

(2012) Dan Coursolle et al.   Frontiers in Microbiology

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis

(2011) Katie L. Barott et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of culturable bacteria isolated from the cold-water coral Lophelia pertusa

(2011) Julia P. Galkiewicz et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial consortia of gorgonian corals from the Aleutian islands

(2011) Michael A. Gray et al.   FEMS MICROBIOLOGY ECOLOGY

Shewanella arctica sp. nov., an iron-reducing bacterium isolated from Arctic marine sediment

(2011) S.-J. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

(2011) Anny Cárdenas et al.   ISME Journal

Spatial and tidal variation in food supply to shallow cold-water coral reefs of the Mingulay Reef complex (Outer Hebrides, Scotland)

(2011) GCA Duineveld et al.   MARINE ECOLOGY PROGRESS SERIES

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Pseudochrysogorgia bellonan. gen., n. sp.: a new genus and species of chrysogorgiid octocoral (Coelenterata, Anthozoa) from the Coral Sea

(2011) Eric Pante et al.   ZOOSYSTEMA

Nitrogen Cycle of the Open Ocean: From Genes to Ecosystems

(2010) Jonathan P. Zehr et al.   Annual Review of Marine Science

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Bacterial assemblages differ between compartments within the coral holobiont

(2010) M. J. Sweet et al.   CORAL REEFS

Limitations of mitochondrial gene barcoding in Octocorallia

(2010) CATHERINE S. McFADDEN et al.   Molecular Ecology Resources

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Threatened Corals Provide Underexplored Microbial Habitats

(2010) Shinichi Sunagawa et al.   PLoS One

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment

(2010) Emiley A. Eloe et al.   Environmental Microbiology Reports

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Culture-Independent Characterization of Bacterial Communities Associated with the Cold-Water Coral Lophelia pertusa in the Northeastern Gulf of Mexico

(2009) C. A. Kellogg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria

(2009) Melanie Kern et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef

(2009) Raechel A. Littman et al.   FEMS MICROBIOLOGY ECOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

Antimicrobial properties of resident coral mucus bacteria ofOculina patagonica

(2009) Jozef Nissimov et al.   FEMS MICROBIOLOGY LETTERS

Shewanella corallii sp. nov., a marine bacterium isolated from a Red Sea coral

(2009) M. Shnit-Orland et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kiloniella laminariae gen. nov., sp. nov., an alphaproteobacterium from the marine macroalga Laminaria saccharina

(2009) J. Wiese et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata

(2009) C. S. Yang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Inter- and intra-habitat bacterial diversity associated with cold-water corals

(2009) Sandra Schöttner et al.   ISME Journal

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges

(2009) Naglaa M Mohamed et al.   ISME Journal

Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates

(2009) N.D. Olson et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Community composition of bacteria associated with cold-water coral Madrepora oculata: within and between colony variability

(2009) L Hansson et al.   MARINE ECOLOGY PROGRESS SERIES

Cross-Kingdom Amplification Using Bacteria-Specific Primers: Complications for Studies of Coral Microbial Ecology

(2008) J. P. Galkiewicz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phenotype-Specific Bacterial Communities in the Cold-Water Coral Lophelia pertusa (Scleractinia) and Their Implications for the Coral's Nutrition, Health, and Distribution

(2008) S. C. Neulinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tissue-Associated "Candidatus Mycoplasma corallicola" and Filamentous Bacteria on the Cold-Water Coral Lophelia pertusa (Scleractinia)

(2008) S. C. Neulinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial communities closely associated with coral tissues vary under experimental and natural reef conditions and thermal stress

(2008) TD Ainsworth et al.   Aquatic Biology

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY