Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

Relationships between Environmental Factors and Pathogenic Vibrios in the Northern Gulf of Mexico

(2010) C. N. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Human sewage identified as likely source of white pox disease of the threatened Caribbean elkhorn coral, Acropora palmata

(2010) Kathryn Patterson Sutherland et al.   ENVIRONMENTAL MICROBIOLOGY

Coral-associated bacterial communities on Ningaloo Reef, Western Australia

(2010) Janja Ceh et al.   FEMS MICROBIOLOGY ECOLOGY

Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts

(2010) Morgan E. Mouchka et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Threatened Corals Provide Underexplored Microbial Habitats

(2010) Shinichi Sunagawa et al.   PLoS One

Evidence for Vertical Transmission of Bacterial Symbionts from Adult to Embryo in the Caribbean Sponge Svenzea zeai

(2009) O. O. Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of Species Specificity and Other Factors on Bacteria Associated with the Coral Stylophora pistillata in Taiwan

(2009) M.-J. Hong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Vibriosp. as a potentially important member of  the Black Band Disease (BBD) consortium inFaviasp. corals

(2009) Luba Arotsker et al.   FEMS MICROBIOLOGY ECOLOGY

Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef

(2009) Raechel A. Littman et al.   FEMS MICROBIOLOGY ECOLOGY

The onset of microbial associations in the coral Pocillopora meandrina

(2009) Amy Apprill et al.   ISME Journal

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Tracking the record of sewage discharge off Jeddah, Saudi Arabia, since 1950, using stable isotope records from antipatharians

(2009) MJ Risk et al.   MARINE ECOLOGY PROGRESS SERIES

Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil

(2009) Monica M. Lins-de-Barros et al.   MICROBIAL ECOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phenotype-Specific Bacterial Communities in the Cold-Water Coral Lophelia pertusa (Scleractinia) and Their Implications for the Coral's Nutrition, Health, and Distribution

(2008) S. C. Neulinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The development and impact of 454 sequencing

(2008) Jonathan M Rothberg et al.   NATURE BIOTECHNOLOGY

Coral Pathogens Identified for White Syndrome (WS) Epizootics in the Indo-Pacific

(2008) Meir Sussman et al.   PLoS One