Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters

Sponge species composition, abundance, and cover in marine lakes and coastal mangroves in Berau, Indonesia

(2013) LE Becking et al.   MARINE ECOLOGY PROGRESS SERIES

Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance

(2012) Patrick M. Erwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community profiles in low microbial abundance sponges

(2012) Emily C. Giles et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing Reveals Diverse and Distinct Sponge-Specific Microbial Communities in Sponges from a Single Geographical Location in Irish Waters

(2012) Stephen A. Jackson et al.   MICROBIAL ECOLOGY

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

(2012) James R. White et al.   PLoS One

Global Diversity of Sponges (Porifera)

(2012) Rob W. M. Van Soest et al.   PLoS One

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

(2012) Nathan A. Ahlgren et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Impact of redox-stratification on the diversity and distribution of bacterial communities in sandy reef sediments in a microcosm

(2011) Zheng Gao et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Recently discovered landlocked basins in Indonesia reveal high habitat diversity in anchialine systems

(2011) Leontine E. Becking et al.   HYDROBIOLOGIA

Deep sequencing reveals diversity and community structure of complex microbiota in five Mediterranean sponges

(2011) Susanne Schmitt et al.   HYDROBIOLOGIA

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Diversity and antimicrobial activities of microbes from two Irish marine sponges, Suberites carnosus and Leucosolenia sp.

(2011) B. Flemer et al.   JOURNAL OF APPLIED MICROBIOLOGY

Complete Genome Sequence of Pelagibacterium halotolerans B2T

(2011) Y.-Y. Huo et al.   JOURNAL OF BACTERIOLOGY

Inducible ASABF-Type Antimicrobial Peptide from the Sponge Suberites domuncula: Microbicidal and Hemolytic Activity in Vitro and Toxic Effect on Molluscs in Vivo

(2011) Matthias Wiens et al.   Marine Drugs

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Diversity, Host-Specificity and Community Profiling of Sponge-Associated Bacteria in the Northern Gulf of Mexico

(2011) Patrick M. Erwin et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Activity profiles for marine sponge-associated bacteria obtained by 16S rRNA vs 16S rRNA gene comparisons

(2010) Janine Kamke et al.   ISME Journal

Bacterial Community Dynamics in the Marine Sponge Rhopaloeides odorabile Under In Situ and Ex Situ Cultivation

(2010) Nicole S. Webster et al.   MARINE BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves

(2010) Newton C. M. Gomes et al.   PLoS One

Diversity of Bacteria in the Marine Sponge Aplysina fulva in Brazilian Coastal Waters

(2009) C. C. P. Hardoim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria

(2009) B. Gao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kiloniella laminariae gen. nov., sp. nov., an alphaproteobacterium from the marine macroalga Laminaria saccharina

(2009) J. Wiese et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Thalassospira xianhensis sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium

(2009) B. Zhao et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Sponge community composition in the Derawan Islands, NE Kalimantan, Indonesia

(2009) NJ de Voogd et al.   MARINE ECOLOGY PROGRESS SERIES

Evolutionary placement of Xanthomonadales based on conserved protein signature sequences

(2009) Ania M. Cutiño-Jiménez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

(2009) D. A. Walsh et al.   SCIENCE

Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts

(2008) S. Schmitt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature thresholds for bacterial symbiosis with a sponge

(2008) Nicole S Webster et al.   ISME Journal

Absence of Cospeciation Between Deep-Sea Mytilids and Their Thiotrophic Endosymbionts

(2008) Yong-Jin Won et al.   JOURNAL OF SHELLFISH RESEARCH

Nitrification controls on fluxes and isotopic composition of nitrate from Florida Keys sponges

(2007) Melissa W. Southwell et al.   MARINE CHEMISTRY